RNA id: LOC110501848


Basic Information

Item Value
RNA id LOC110501848
length 7960
RNA type mRNA
GC content 0.48
exon number 50
gene id LOC110501848
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70552263 ~ 70642587 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGGCGCCTCCTGATGGTTCGACTGGGGGGCAGAagattccagtacctggttgactccGAGGGTTATGgcctggaggagagGGTGGCGTGGACCAATCTAGACTTCCCTTACCAGCTGCACCTCTCTCTGTGCCCTGTGAAGTGCTCCTCACTGCCGACCCTGCTAGTGCGCAACATTGGTTCATGCCTTTGTTCTGTCAAGCCCTTTCTCATTGATGTTAGTGAGAGCATGCAGGTGAGGGTGGACTTCCTTCCCAAGACTGAAGGAGACCACAACGAGGACCTGCTGCTTCACTACCACTCCGGGGAGGATGTTTACATCAGTCTGTGTGGAGTGTCTACAGACGTGAATGTGAGGCTGGCTAGGAACTCTGTCATAGTGGAGACAACCTACATTTCCATGGCCAACCAAAGCTCAGTCTCCATAGTGAACAGGAGTGATACTATAGTCCACTATCAGTGGAAGAGATGTGCcactgaacaggaggaggagcagcagaagCTAAGGTTCTGTTCCGAGCTGCAgcgggaagaggaggatgagatggATCAGTTCCTGACAGAGTGTGACGAGGGGGACATTTGACCAAACACCACCTCAGATGTCAACATCATTTTCAAACCACAGGAAGCCAAGATCTATTAGCAGATGgtctactttgacattacagGCCGTGAGTCTCGCCTACCTCTATGAATAAAGGGGGAGGGCGTAGGCCCCAAATTGCAATTCAAATTTGACTTCCTTGACATGGGTAACATCTTTATTGCCTCCAAGCACAGCTATGAGCTGCTTCTATCCAATAAGGGTCTCATTGAGAGCGTGGCAGGCCCCAAGGGCGCCTTTAACCTGGTTCCTCCCGGCTCAGCGTTTGTCCAGTGTTTCTCCTTCAGCCCCACTAAGAGGATGGTTCcccCTGGGGCCTGTCACACTCTGGAGGTCTGCTTCTCCTCCAGCACCCTCGGGGTCTTCACTGAGGAGTTACTCTTCACCGTGGGGGATACCCTCCCTCACCCCATCACtatttatttgaggGGTTGTATAATGGACCCCACGTTTCACTTCAACGTCTCGGAGCTCAACTTTGAGGATGTGTCCTTCGGAACCATGCGTCCTCAGGGACTTGTTGACATCAAGGTGACCCTGTGCTCCAACAGTGTGCAGCGCTACAGCCTGGCTCTAGTGTTGGATGCAcaaggagtgggagaggaggtgcTGGCCCTACCCATCAATGCCAGGTTAGAGATCTACACCCAGGGTCAAAATACACCTCTTACAAACCTGCTCCTGTCCTGCATTGGGGAGGATGCGGTTGTCCATGTGATGACCACAGAGGTGGACTTTGGCACCATATCGGTTCTGACCGATGTCTCCAGAACATCGCAGCTCTCAAACCAGTCCCTGATACCAGCCCGCTTTGTGGCACAAATGGTTCGCAGCAGGTGGCGGGTGGAGCCCAGTGAGGGAGAGGTTCCACCCCAGGGGAAGCTGGAGCTGAGGCTGGTCCCTCACCTAGAtgacaatcaatcaaatagggtgcactTCCAGGACAAGCTGTACCTCTCCATCCAGGATAATGAAACACACCATCCTTCTCTCTGCCAATGGCAAGGGCACTACCATTGTCACCAACCGTCCTTTTGTCCCCAGTCTGGACCTGGGGGCACATTTCAGCTCTGGTCCATATCAGTACTGTTTTAGAGTGACCAACTGAGGTCAGCCCTCCCACCAGCTTTACTGGAACACAGAGGGGTACccccagagcccccccccccccccccgcccaccaACACAACCAGGGAGGAAAAGAGTTGCAACTCCCTGGTTCCCCCAGCAGTAGATGGGCCGTTCTTCAGACTGCATCCCAAACGCATGGAGCTCGCCACGAGACACACTGCTGACATGTTGCTGGAGGGCTTCTCTGACTCTCCCAAGGTGGGAACATAGAGGCTGGTGTGTCACGCCATGCTAGGTCACCAGAGTGGGAAGGAGCTCAGCACCTGTCTTGGACATCTCCTCCCAGCAGCTCAGCTTCttagtggagaaggtacaTTGTTTGACCATCTGGCCGAGGTAAAAATCATCATGAGGAACACAAGGAAGGTGGGCTTTGAGTTCAGTGCTCTGTTGGGGGACCAGGATGAGTGTGGGGACTCTCGGCCTGGACatcccctggtcatccctagAACGTGCTACACCGAGGCGAAGGCTGAGCGGAAGCTGTCATTGTACTATCTCCCTGGGATCCCTTAGGTTTTCCACAAGACTGCAGGAGGCTTTGTGTGAGCCAGAGAGCATCACTCTCAGAGGAGAGGGCATTTTCCCCAGGATGTGTCTGGACCCAATGGTGAAGGAGTCCACGGAGGccctggaggaggacaggagagataaAGGCACCACTCGGCCAACCACTGGAGAGGGCCTCCTGTCTGACGAGGACTACATCCCTACACATGATTCCCTGCTgcagatggaggtagagaggctCTTGGTGAAACAGAATGCCATGGCTATTGAGAAGAGACAAGTGGACCATAGGGACACACCTGCGTCCACTAGAAAGGGGCGTAAGAAGCTTGGCAGTCTCATGTTGATGGAGTACACAGTGGATTTTGGCTATGTGATCCAGGGTAGTGTTTCTACTCACATAGTTAGTCAAAGTGACAAACACATGTCTGTTTCCTTCTGGGCTGACCGCCGACCGCTTACAGGCACAAGGGGGTTCCTGGGCAGCATTTGGAATGAATGTAGATAGATAATGCTATATGTGGATGGTTTTGATCCAGAGCTGTCTCCTATCCTCAGGGTGAAGAACCTGCCCTATTGTAAGAATGAGACTTCTGAGGTGAAGTTTGAGCCTATCTGGATCTGAGGGAGATCAGCACCGTCATGCCTATACAGATAGTTGGGGGCCTTACAGTCCAGATCCGTCTGTGTGCCGTAGTCACCATATCCGCCGTCTCAACCTCCACGGATATGCTGCAGTTTGACAGCCTCCAGTGTGGACTGTTTCAGGTGACCACTGTCCAGCTGTTCAACCACGAGCCTGTCCCCTGTGAGTGGAGTATCACAGAAGAGCAACAGCCCAAGGAGAAGATTGACAAGCATGTCCCCCTCCACCTGAGATGGAAGGCCAGATTGGAGCAACATCCTCCCCCAAGTGTGTTTGAGATGCTTCCTTCAACAGGCGTGCTGTATCATGGAGACAGTCAACATCCAGGTCAAAGTCAGCCCAGCTGAGGAGAGGGTGTACAGCCAGAGGCTGGTGGTGTCAGTGGCCCAAAGCACCCAGAAGATGCTGCTGCTGGCCAGGGGCAGGGAGAGGAGCACCAGCTGGAGTTATCCTCATCTGTGCTGGAGCTGGGACCCACCCTCCCATTCAGTGCTGGAGAGGAGACTGACGTGATCATATGGAACCCTTGCCTCTTTCCCATCGAGTTCTAATCCCGGGAGTTTGACAAGAAATACCAGGAGGAAGAGAAGGTGAAATCATTTGACTaTTCTGCGTATGATGACCAGAATTTCCTGCTGATGCCCCCACGCGCCCCAGGAGAGTCACTAACTCCTGAGCTAATCGACTATTATAATGACCACAACTGTGAGGAGGAGGACGACTCCAAGGCTGGCTCCTCTAAAGATGAGGAGGCGTCTGAagcaggggagaagggagagccGGAGGAGGAGCTGGCCACCCCACCCCTTCCAGAACAACTCATGGAGGAAAAAAAAAAggcagctccctccaaagatgagACGTCATGTGGAGACCTGATCAAAGCCACAGTGGACAGCAGGACTGCCAGTGTGGGGGACCTGGAGGTCAACCCAGTGTCCAGAGCTATCGCCCACCACATGGTCATTGACCTGTCACCTGAGGGCCAGGCTACACGAAACCGCCGAACATCGCAGTCATTGTGCATGGGGCTCCCCTCTCAGGAAAGCAGCGCACAACAGTGACTCTTGACAAACACTAAGGTGCAGCATGTCTAAGCATTGATCCTGTGGTGCTGGTTGCATTGTCCTCAGGGATGACCTCTGCTAACCTGCAGGCCCACAAGCTGTGTGCCAAGGCTGCCATTGAGCATGCTCAGAAGAGGGTGGAGGAGGCTGTGGTGGAGGTGATGGGGCCTGCTGGTCAGGGTGCTGGTACTCTGAGTGTGGAGGCTATAGCCAAACACCCTGCTGAGGGCAGTCAAGTCAACGACCCCCATCCATCTCCACCAGTAACAAGAACAGTGTTGTGGGGTGGTGTTCCTATCCACCAGCAGCTGAGCATCAATCCAGACCAACTGCTGATGGGCAACCTCTCAGAGAGACCACAGCTGAGTGACTGTCACCGGGGTGTTGTGATGGACGGGATGGAGACGCTGTACTGCCGCTCCCCCAGCAGCACCCTATAGATCACCAAGGCTTCATCTACATGGTCAACCTCTCAATCAACTACTACGTCTTCAAAGCCAAGGAGAtggcacagagagaggcagagggtgaGGACAAACTAGTCCAAAGGAGACTCCCTCCTATCCCCTCCTCCACTATTTCCTCTGTCATACTCTACACTAAGAACAGGCCTGTGCCCAGTGCACAGCAGATCACTAGTTGCTTCCCCTTTATGGAAGAGGTGTTGACCTCTACTGAAGGACGGGGGAAGAAGGCAGACACGggcagagagaAACACACAAGAATAAACACTGATGTGCATGAATGTGACTTAAAGGTTTGTGTTGTTTTCTATAGGCTCACCACATTCCACTGGAATGTCCCGCCCTATGGAGAGGCGATCCTGAAGATCTGGTTCCACTCCCAAGTCCCTGTCAAGTTTGACAAAACACTGAACTTTGAGTTGTTGGGTACCAAGATATGTTTCAAAATGTACTGTGGGGGAATCTGTACATATCTATCCATCAGCAGAAACACAAAGATGGTATTTGCCCACAGGAAGAGAGTCCTTTGCTGAAGCGTTGCAGAAGAGCTACATCATCCGCTCTGGCCTCTATGAGTTTGGCCCACTGCTCTGTTGCAAGACCACAGATAGGTATAAAGAGAGGAAGTATCCAGAGAACATGGAAAGGCTGGTGATACACAACAACACCCCACTGGATGCTGAGATTCATTTCTTCTTCCAGCATGACACCAAGGCTGCCACCTACCAACTGGACCCTCCCAACATCCCAACGAGAGACAAGAAGCCAATCAGAACTACTCATGACATCATAGAATGTAGTCTGAGATGTCGGATTAGTCAGAACCCTGACTGTGTGACACAAACTTACCTAGAAGTTATGACTGTTCACGTGGTCCACCTCTATGTAGACTGTGCCAAGGAGGTGACCGTGGCCTTCTGCTCAGAGCCGCCCGTAGTACTGACTGCCCAGCCTATCAAGTGTAAGCTGTGCAGGGTGGTGTTCCAGCAGGTGGTGGACCAGGTGCCAGACTGGGACGACCGCCTCAGGACCATCATGTGGGTTGAGTCTGGGAAACAGGGAGGATATTTGCTGACTACTCTGGTCAAATGCTACACCACGCCCACGGACGTCAGTTTCTCCACAatcagtctggatctgagtacctccccaaTGATTTCTGGAATAGGAGAGACCATCCACTTCAAAGGACACACTGCTCTATCAGACCAGGCTCACCAAACAGTGTATCTGGTGAATAGGGAGAATCAGCCCTTCCAGTTTATCATTGAAGAATTGTCTTGCCACTCAGAAGCCTTTCTGGACAGCCTGCAGCTGGAGCCTATGGAAGGGGTAGTGCCACCTGAAGACAGGTTTCCTGTGGTAGTGTCCTTCACCCCAACACAAGATGGAGTGGTGATCTTTAACCTGCTAGTTCAGGTGAAGGTCCAGCCCCTCACTATGAATGTCAAGACAAAGGGCGATAGCATGAACGCCTGCCTGTATGCAGTGTGAGAGCACCGAGGGAGGCGTCGCTGAGCTGTCCCCAGGCAACTCTCCTCATCAGGTGGACTTCAAACGGGGGAGAAATGTGGGCTTCAAAAAGTGTGTGCTCAAAGACATGGGCCTCAACATCAAGGCGGGGTTCCAGACGGAAGTGCTGCCCCCTGGAGGGTTCATGGCGGTGCCCATCACCTTCTACCCATAGGAGGCAGTGCAATACCATGAGCGAGTGGTCTTTGAGATCAATGACAGTGTCGAGCAGGTGGTCGAGACCCTAGGTCAATGAATTGAGATGAAGGTTGACTTTGAGGACCCCAGACACAAGGTGGTGAATCTGGGGGCTCTGCAGATTGGTCAGAAGATCAGGAAGGTGATTCCCCTGGTGAACAACAGCCACTCCTCTCTGACCTCTCCCTTCTGCTCAGCTCCACTGTACACACTCTACGTGTATTTCTCTCCTGTACCGTCGGTGCTGTCAGTGAACCCGCCAGGTGAGGTGACCCTGAAGCCTTTTGGGGGCCTCTGTCTGGTGGAGGTGCTATTCTCTCCCAGGTAGCACATGGCTCCCTTCACCTCAGAGCTGCAACTTGAGTATCTGGGCACGGTACGCCCCCTGCTGGTGCTGAATGGCTGCTGTCATGGCATGGAGGTCAAGCTGGACCAGGACTACCTGCCCTTTGGAGCTGTTGCTCAGCGCTGCAAGGCCATAAAACGCATCATGCGGAACACTGGAGAAATTGGAGCCAGGTAGTTCCAGTGGGATATGAAGAGGTTTGGCAGAGACTTCACCCCTGCAGAGGGCTACATATGCCCTGGGATGGAGGTTCCCTTTGAGGTGGCCTTTGCCCCTGTGGAGCTGAGTCAGGACCTGAGATATGATGACCTGCCCTACACCGTAGAGAGAGCCATCAAATTCACCCTGGCAGGCTCCTGAATCATGCCCCCCATCATTGACCTTGTCCTACTTCACAAATCAGCGCTGGACTCTGAAGCCTGTGATCGAGGGGGAACACTGGAGTGGCCCTCCTCCTTCATCATTGATCCCTACCAGCAGCACAAGGCTTATGAGATCACATACAAACCCATGGTCTTGACCCCAGATGGCAAGAAGCACCTGgACTCTGTGTTCTTCTTCCCAGATGTGACAGGCATACTCTACACTCTGCATGGCACTTCTGAGGCCCTCAAAGCTGTGGTCGTACACTGAGACAGGGCCTGTCCACAACTGGCACTCCAACCCTCagcagtaccacactactacttTAGCAGGATGTCTATCAGCTGTTTAACACCTTGTAGTGCCACTGCTTCTACCTCTgtcacactacactacatcaccacaacTTTGTCAGCTGCCAGTACTAAAATGTTCTGTGTGCTGGTTCCTTGCTGTGGTGGAGATCATCAAGCACTGTGTCCCTGAAGGGCCTGGACTATCTGGATGTACCAGCTCTGGCCAAGAGGGACTACATGGTCTTCTTCTTCGCCTACAAGGAGGGCCAATGCAATGCAAACGTCAGTGGAGAGAATCTGCTCATGTAGATGTACAATATAAATGCATACTGACCATCTTCAGAGTACCTGTTCTCCTACCTAAACTACAAGGCCACAGAGACGGGTATCATCAGCACAATAGATATGGTGACTCCGGTGCGCCAGACAGCCTCTGCCTCTGTGAGAATGGAGAACCTCATTAGCCTGTACTTCAGTGCTGAGTGCCGCAGTCCAGATGTCAGTGTCTCCACAAGTATTGTGCCTGCATTCTCCAAGTCTAGATCCATGTGTTCTTCTCAGAGCCACTAGGGAGAGCACTTGCTCCTCTCCAAATAGCACTCATTTGGCATCAGCACCAGATACTGTACCTCCTGGGTTCATTTGTGGGAACAGGATGGGTGTTCAGAATGCATGAAATATATGTTTCCAATTAGCATAAACAGCAGTTCAATAGTGTGTTTGGTGAATAGTtggaagtgtgtgtgagagacagggtGCAAGCAGTGAGTGAGCAGGATGAGGGCCTGTGTTTTGGGAAAGGTAACTATTAAAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202753 lncRNA downstream 162678 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 163361 70386034 ~ 70388902 (-) True G178484
TU202751 lncRNA downstream 166460 70385137 ~ 70385803 (-) True G178483
TU202750 lncRNA downstream 167149 70384774 ~ 70385114 (-) True G178482
TU202743 lncRNA downstream 180887 70371115 ~ 70371376 (-) True G178476
TU203448 lncRNA upstream 42329 70684916 ~ 70685225 (-) True G179139
TU203443 lncRNA upstream 46666 70689253 ~ 70690634 (-) True G179134
TU203450 lncRNA upstream 49003 70691590 ~ 70691865 (-) True G179141
TU203508 lncRNA upstream 135849 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 199733 70842320 ~ 70842577 (-) True G179233
XM_021570520.2 mRNA downstream 5534 70402638 ~ 70546729 (-) False LOC110495228
XM_021570521.2 mRNA downstream 5534 70402638 ~ 70546729 (-) True LOC110495228
XR_005039462.1 mRNA downstream 11654 70540554 ~ 70540609 (-) True LOC118944152
XM_021570386.2 mRNA downstream 341951 70182496 ~ 70210312 (-) False LOC110495034
XM_021570394.2 mRNA downstream 341951 70182496 ~ 70210312 (-) True LOC110495034
XM_021570536.2 mRNA upstream 70602 70713189 ~ 70731355 (-) False chka
XM_021570532.2 mRNA upstream 70602 70713189 ~ 70733880 (-) False chka
XM_036954750.1 mRNA upstream 70602 70713189 ~ 70733880 (-) False chka
XR_005037713.1 mRNA upstream 73397 70715984 ~ 70733880 (-) True chka
XM_021570543.2 mRNA upstream 91590 70734177 ~ 70741423 (-) False kmt5b
TU201996 other downstream 847864 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 960541 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 3859413 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 4161497 66375226 ~ 66390766 (-) True G173696
TU197514 other downstream 4213877 66335412 ~ 66338386 (-) True G173675
TU203498 other upstream 126571 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 262785 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 284103 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 284103 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 301040 70943627 ~ 70944761 (-) True ttc23

Expression Profile