RNA id: XM_021570532.2


Basic Information

Item Value
RNA id XM_021570532.2
length 5352
RNA type mRNA
GC content 0.39
exon number 12
gene id chka
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70713189 ~ 70733880 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacttaatcagcatggctactacagaattctgcagtgatacaccatcccatctggtttgcgcttagtaggactataatttgattttcaacaggacagcctccaggctgtgtcagcatatgtgggaactccaagacttttggaaaagcattccatgtgaagctggttgagggaatgccaatcATGtgtgaagctgtcatcaaggcaaagggtggctactttgtagaatctTAATTTTTAATGAACACTTTTTGTTGTTACTACATagttccatgtgtgttatttcctagttttgatgtcttcactattattctacaatgtagaaaatagttcaaataaagaaaaacccttgaatgagtaggtgtgtccaaacttttgactggtactgtatatttttatacTAGGTTGATTTAAAGTATGTTGTACAACTTTGGACCTGTCACTAATACTGTGTTCTGTCatatgtaggctactgtctgtagtCTTGATTAAGCTACCTTTTTGAGTTGCTTGCATAATGTTGAGAATTACAGCTGAATTTGATAAAACATGGCTGTGTTTTCTATAACTTTGTTTTTCTTAACATTCATCTACTTTGGAAAAGAAAAACAATAGTAAACTTGTGCTTATTTCTGGTGAATGTAGTTTATTATGCAAATCACAAAatcttgtttttattttacagTTTGAGTACTCAAATTAAAGTTTTCTTCCAAATGTAATGTCTTCATGACCTGATGCACTTCGCTGCTCTTTATGGAGACGTGGTCAAATCGAGGAACTTTAGTTTCCATTCTTAATTGCTGCCCCCACAAAGATCATGTGAATTCCCTGAAATATAggatatgttttatttatttaacctttatttagccatGTAAGACCCATTGAGGTTAAAAACCTATTTTGCGAGGATGACCTGGCAAGAAGGCAAAACAGATTTGGCTGCCCTACATTATTTGTAAACTGTAGGGGGTGTCTTCAAATAATATGTAGTATTTTTAGTGAGAGTTGATACTTGAGAATGGGTAATGGGACAAATAGCATTTGAAGTCTACACTACTCCTTGGGTACACAGACTTGACCTCAGCTTTTGCCATATTAATTGACCCTTTTGTGCACACAGATCAGCACAAACATTACATAGTCACAACATTTGTAGGAAATGCATTGTGAAAATATGAAATTCCCAGAAGTCTCCCATTGAGGTGTAAACTGTTTTATAGAAAGTCTTGTTGAATTAGATCTTGAATAACAAAAGCATAATTCATAGCATGGCATAAAGTCAGTTGTCTGCCCACCACTCTGGCAAACAGAATAATTGTTTTCACGGATAAAAGCAATAGCAAGAGGACAATGGTTTGCTATCTATCATTTGCGAAATAACTACAAGGAGGCTTTCATTGTGCATGGGAAATGGTGCTGGGTTGGCTTTGTTTGCTCGTGAAAGGACGTGCCCGTGCCAACCAATGAGGGGAGAGAATGAGTGCGGTAGTATGACGTGTAGATGCAAATCCCCTCGATTTCAGCCTATTGCCTGACTCAACCAGCAAGTGTGTGTCTTCAGTCTTCATTCTTTGCCACGGAACGAACCTGTTTATTCTGCTGTCTGAATAAAACGGACGCGTGTTATTGTTTTGCTGGGGATTAAAGACACATTGCTTGAAATCAAATCGTATATTTTTCTTCCTCAACGCAAGGCTGCGTAATTATAAATTGACTTTAATCTAATTAATTCATAACTGTACGCTATTTAGTATTCATTTTAAGACAAAATGAAGACAAAATTTATCAACGGGGTGTCATCCTCCCCTTCTATGGCCTTGGGTTTGTTGGTCACTGAAAACGCACTTGAGGTCCAGCCAGACACTGAGGATGAATGCAAGGAAATCATCCGACCGGATGAGCCCGACCAGGACACGAAGCGCAAGGCGTATTTATGGTGCAAAGATTTTCTCCACGGTGCGTGGAAAACGGTGACAGAAGAGGATTTTCAAATCAGCATAATAAGGGGTGGCCTCAGCAACAAGCTCTTCCTCTGCGCCCTACCCGACATCCAAACCAGTGTAGGTGACGAACCCCGCAACGTCCTCTTGCGTCTGTATGGAGCTATTCTACAGATGTCCTGTAATAAGGGGGAGCCCAGACAGTCAAACAAAGAAAATCTCTTTCAAGGTGCTGAGGCCATGGTGCTGGAGAGTGTGATGTTTGCCATTCTGGCTGAGCGGGAGCTTGGGCCCAAACTCTTTGGCATCTTCCCTCAGGGCAGACTGGAGCAGTTTGTCCCAAGTCGTAAATTGGATACGGATGAGCTGAGCATGCCTAGCATATCTGCTGAAATAGCTGAGAAGATGGCCAAGTTCCATGGTATGAGGATGCCTTTCAACAAGGAGCCCAAATGGCTGTTTGGAACTATTGACAAGTACCTGAACCAGGTGATGAGACTCACCTTCACCAGGGAGTCCCACATGCTCAAGTTTGCCCGTCTGATGAGCTGTAACCTGCCCCAAGAGATGGAGAATCTCAAGTCTTTGCTGGACTCCAGTCATTCCCCTGTGGTTTTCTGCCACAATGACTGTCAAGAAGGAAATATCCTTCTCCTCAGTGGTTGTGAAGGCTCTGACAGACAGAAGCTCATGCTGATTGACTTTGAATACAGCAGCTACAACTACAGGGGATTTGACATAGGAAACCACTTCTGTGAATGGATGTATGACTATACAAATGACAAGTTCCCATTTTTCCATGTCAACTCAAATAATTATCCCACTAAAGCCCAACAGCTACATTTCATTGGAAGCTACCTGTCAGAGACTGAGCAGGGATTTGAGAATCAGAGTGCTGAAGACCAGATGAAACTCAAAGAGGAGCTGTTTGTGGAAGCCAACAGGTTTGCTCTGGCTTCGCACTTCTTCTGGGGTCTGTGGTCGATGATCCAGGCGAGAATCTCCACCATTGAGTTTGGATACATGGAGTATGCCATGGCCAGGTTTGATGCATACTTTGAGCAGAAACGGAGCTTGGGGGTCTAAGCGAGGGACCACATACTGTAACAAGGAGGTGGAGGATGAATGGATTAACAGCgcttaattgaaaataatgcagACAGGCAATCAGGGTGTAGGACCATGCTTTAATAGCGAACCTGTGCTTTGGGAATGAAACGCTCGCTATAGTTGGTATCGCATGGACCAAAGTGAAACCATGAATATCTGGTTTGGTGCCCCATGCATCGCTGCTCAGTGTTTGCACAATACTACGCTCCTTTATAACACACGCTCACAGGGTCAAGATTGTTCTTGGCCTGTCTTTTCTTCAAAGAACATCAGGAAGATTAAGACAGGGATAAAAATCTTCATTCTGAACGGAGGTGTAAGTTACATCCCCAGGAAGTCCATTCCTGTTTGGAAATGTTCTGGCGTAGCTCAAAAGATCAGAAGTCTCAATGAGCCTTAAAAATCCTTGCTTATTGAAAACCCAGTAATCTCTTATCTGTGACCCAACGGCAATAGTACATTTTCTGTGACATAAGAGCAAGGTTCAAAACATACGTCAAATAACTAAACTCTCAGTTTCAATTGATTGTTAGTTTTTTTGCATCCATCCAATACATTTCAGTTTTCCTTCATTCTTTATCAAAAGTAATTCCTCTAAGATGACTTGCATATGGAAATATTTGGAGCCACCAATTAGATGGGTGCGTCTCTGGCTAACAGCATTCCCCACCTGCAGTACTGTAAATATAATCTGATAAATGTGACATGAAACACAGTGTACTCTTTGaaaaaagtgttcttcaaagggttctcctatgcgGATAGCTGAAAACCccttttaaggttctagatagcaccttttgttCTAAGAGTGTAGTAATGGTGACCTCACTACCCTACTTTGTACTTACAATAGATGGGGATTGTGTAGAGTAAGAGTATCAGCTCTGAATAGGTCATTGAAATGGTTTTGGTATTCAAACAGATATATTCATTATGAAAATGCAGgtccttctacacctgcattgcttgctgtttggggttttaggcagggtttctgtacagcacctgGTGACattagctgatgtaagaagggctttataaatacatttgattgattgattgaatatatCACAGATAGTACATTGGATAAGTAAGGAAATGGCAAACAGGAACGCTCTCAGCTTTAACTCAAACAGACAAACAATAGAGATGCTTACTGTGCTATTCAGCTGGAGTAAACAGTTGCACATGTAGTTGTGAGAAGAACTGTAAATAAGTTGTAAAAAAATCCTCATGTAGAGGTCTTTAATATGTATAATGATATATTTAGAATGTGTTTGGGGACTGGAAATATTTACTTTactttttttttgtgaaaaattcATAACCAAACTGTGATAATTAGTGCTGTTTTAATATGAATTTCTATTCTGTATTTCATCATTCTATTTGTTTTATGTAAACATGTTTATTTAATCTGGTTAATATAATATTGAAACAAATATGAGCCTTCACTTTGAAATGACATTGTTGCGTAGGCTACAATGTCAGTGGCACTTCAATCTCATTCACCAGACACTTCTTCCCTATGCTCATACGCTATTAGCCTGGGAGCGAGATGAGTGGCACTTTCCTGACCAGTTGCATTTTTAAGGATAACGTTTTAAATGTTTTCCTTAAATGGAATATGTATTTTTCTTAATAAGAAAGTTGTCTCTTTCCTTGTTGAAACACATCTCACTCCTGTTTTCTCAACACCTGCTATATCATTATTGTGTGATCAACTACATTCCATTTTCaggtatatgttgtgtatatttgtatgtacattaCACCTCACTTTCATGCTATATTATTAGTTTGAGATAATAAAATAAGAATTGATCCAAATGTATTCAAATGGAATTGTAATTGACAGTGTCACATACAGTTTTCTGACTATATCCTtgctgtatttcatgttttgccATTCAATACAGAGATCAAATAACATGCGATTGATTATCAAAACATGAGGGAAGAAGGAGCTCCTCTACATTACACTGAATATTGTTGATTATGAATATTGTAATCTTATGGATAATTGAACTGAATGTCAAATTTGTATATGTTGTGAAAGGATCCCAACTGCTCTATTTTGTGAGTGCAAACGTTTAGCCTGGCTTACCTATAAAGATAGCTATGCAGATATACACTAAAATAAGAAAATATGTACCGTATAAATTCTTCCCTTGTAAATAGCAAGGGTCAAGTCATTTGAAAATGTACCACTATGGCAAGTTCATTATATACATTTACTGTACCTTCTACTGCTTTGCACAAGTACTACAATAAAGATAAAGAAATAAAACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203450 lncRNA downstream 21324 70691590 ~ 70691865 (-) True G179141
TU203443 lncRNA downstream 22555 70689253 ~ 70690634 (-) True G179134
TU203448 lncRNA downstream 27964 70684916 ~ 70685225 (-) True G179139
TU202753 lncRNA downstream 323604 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 324287 70386034 ~ 70388902 (-) True G178484
TU203508 lncRNA upstream 44556 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 108440 70842320 ~ 70842577 (-) True G179233
TU203570 lncRNA upstream 114751 70848631 ~ 70848836 (-) True G179235
TU203571 lncRNA upstream 115706 70849586 ~ 70849967 (-) True G179236
TU203575 lncRNA upstream 124420 70858300 ~ 70858508 (-) True G179240
LOC110501848 mRNA downstream 70602 70552263 ~ 70642587 (-) False LOC110501848
XM_021570520.2 mRNA downstream 166460 70402638 ~ 70546729 (-) False LOC110495228
XM_021570521.2 mRNA downstream 166460 70402638 ~ 70546729 (-) True LOC110495228
XR_005039462.1 mRNA downstream 172580 70540554 ~ 70540609 (-) True LOC118944152
XM_021570394.2 mRNA downstream 502877 70182496 ~ 70210312 (-) True LOC110495034
XM_021570543.2 mRNA upstream 297 70734177 ~ 70741423 (-) False kmt5b
XM_021570540.2 mRNA upstream 297 70734177 ~ 70741634 (-) False kmt5b
XM_036954772.1 mRNA upstream 297 70734177 ~ 70741634 (-) False kmt5b
XM_021570553.2 mRNA upstream 297 70734177 ~ 70741635 (-) False kmt5b
XM_036954774.1 mRNA upstream 297 70734177 ~ 70741635 (-) True kmt5b
TU202994 other downstream 152334 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1008790 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1121467 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 4020339 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 4322423 66375226 ~ 66390766 (-) True G173696
TU203498 other upstream 35278 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 171492 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 192810 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 192810 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 209747 70943627 ~ 70944761 (-) True ttc23

Expression Profile