RNA id: XM_021570540.2


Basic Information

Item Value
RNA id XM_021570540.2
length 4596
RNA type mRNA
GC content 0.45
exon number 12
gene id kmt5b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70734177 ~ 70741635 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTCTCAAATGTTCATGTGTTTCAAGTTTGAGTAAGCAGTGCGCAGGCTATTTCAATTTATAAAGCGTCGGCTACTgtggtgttattattattatttgttttacaaTTTAGTTAGCTAATACAACAGTTATTAAACTTCATGTACTCACGGATTAATCTATGAAACTGCCGTAACATCAAACACTGCCAATTATCTCGTCGTGCATGATGGATCACATAGTAGTACAAACGCAGGAATAACAAAGTTTTCAACTGATGGTATGGAGCAGGGGTTCCCATACGTTTTCACTCAGGCCTCCCTTCCTGAATTGGGGAACATCCCGCACCCCCCTTGTGCGCATcacgtctatttctatgggcataAACACTGTTCATGACCGattgttcacacccctcttgttggcggaGAGCAAAtgttgcaggtttaaagcttattccctgcaattctacacatgtcATGTAGTGCAGGTCCAGAATGCATAGTTCTCGATCCCTGTCAGTATCAAGATAAGATTCAACCACCCTGGCCTCCTAACCTCCCCTCATCCTCACTGCAGATCTTCAAGCACAGACTAGGGTAAATGCTGCTGGATCTGGCGTAATGAGGTAGATGGGGGAATCCAAGAACATGGTGTTGAATGGCAGGCGGCATTGCAGCAGATTCTCCAGTGATCGATCCATAACCTCGGCCAGGTCCCTGCGTCAGAGCAAGGGCTCCTTAAGAAGTAGGAGATGTAGTCAACGTGTCATCAGTTCTACCCTTGAGGCAGAGAGACGTCATACCCCGTCGTCAGGTATGACTCCAAAGGAACTCTGTGAGAATGATGACTTGACTACAAGTCTTATTCTGGACCCCTACCTCGGCTTCCAGACCCATAAGATGAATAGCAGGTTTCGACCCATCAAGGACCGACAAGGACATTTGAAGGAGGTGCTAGAGTGCTTTAAAAAACATGATAACCTCGAGAAGGCCTTCCATGCCTTGACTGCTGGGGACTGGTCAAGACCCCACTTTCACCACAAGACGAAGGCTCAGGGCAAACTCTTCAAAGAGCATGTTTTTGTTTACCTACGAATGTTTGCAACTAACAGTGGGTTTGAAATACTTCCCTGCAATCGTTATTCCTCTGAGCAGAATGGAGCCAAAATTGTAGCAACAAAAGAGTGGAAAACCAATGATAAGATGGAATACCTGGTGGGCTGCATTGCTGAGCTATCACACCATGAGGAAAGCATTTTACTGCGACATGGTGAAAATGACTTCAGTGTGATGTACTCCACCCGCAAGAACTGTGCTCAACTGTGGCTGGGACCTGCAGCCTTCATCAACCATGATTGCAGGCCAAATTGCAAGTTTGTTTCCACTGGGCGAGATACAGCATGTGTCAAGGTTCTGAGGGATATTGAACCTGGGGAAGAAAtctcctgttactatggagatgGCTTCTTTGGGGAAAATAATGAACTCTGTGAATGTTACACCTGTGAAAGACGCAGTGCTGGTGCTTTCAAACCGAAGACTGGGCAGTCTACGGCCACTCCTATTATCAACAGCATGTAtggcctgagagagacagacaaacggCTCCATCGACTTAAGAAATTAGAAGACAGCAAATGCTCTGACAGTCAGTTGGACGGCTCTAATATGGATCCAGACTCTCAGGAAAATCGTGACACACATTCATCAGTAGGGAGGACAGCCTGCTCCAGTGTGACCAGGCTCAGTGACGCACAAGCCCTAAGCAGGCAAACTCTGTCCAAAATGCCTATGCCTACCTCATCATTCAATCAAAGACACTCAAAGAACTCCAACGTGCAAGAGAGACGAAACTCAAAGTCCGTAAAGCCTTTACACAAGCTAGGAAGAAGGTGTCAGGTAACTGCTCACAGGTTCCCCATTGAGGTGGAAGCTATGGGTTTGTGCCTTAAGGACCCCACAGAATTAGTCAGTAACAGGGTCTCGCGAAAGAGTGTGATGGATAAGCAAGGACCCATGCAAGTGGTGGGAACAAGGGGTTGTCTTGTGCACTACACTGTGAAGGAACACATTCAGAACTCAATGAAAGATGGTAGTAGGTGCCCTGATGGTTTAGCTTGCACTCACAGAACTCGCAGTTCAACCAGAGCATCAGTTGGCACACAGGGGTCTGACAACATTAAACTTGAACCAAACTGTGGTGTGGTTAGTAAGACCAAGCCTACAGACCTCAGAGATTATGTCACAGATGGTCACTGGATAATCAGCCCAAGCCTGGATATCAAGTGTCCAAGTGAGACCTGTCCCAGACAGAGGCAAATGATAAATCAGGAGGAGCAGCACTCTTTCAGACCAGCATCCCTTCTCCAGGAGGAGGTTCCAGGCCTGCACCATGCAGCCCGTACCCCAGACATAGCTGAATGCAGGAAAGAGTTGCAATGCCTGCCTGATTGTTGTAGTACTCACGACAATCTGTCTAAGGGAGACCAGCTTCTCCACCTTGGCAAGGGGAAGAAGAAACAGCAGATTACGCGCTATGATTCCCAGCTGATCCTAGCCAACAACAGCTCAGGCATTCCCAAATTAACCCTGCGGAGACGAAGGGACAGCGGCAGCAGTAGGATTGAGTCTGACCCTGTCAAGTCCTCCAGCTCCACAAAGACCAGCATGAAATTTGGGAAGAGCCATCACCGTGCAAAGACCAAAAGGAGCTCTTATGCAGCCAGATGGAGTAATGGGACTTTCAGTCCTGTGGAACACATccattcctccaaacatggcCTCGGTCCTGTGGAACACATCCGCTCCTCCAAACATGGCCTCAGTCCTGTGGAACACATCCCCTCCTCCAAACATGGCCTCAGTCCTGTGGAACACATCTGCTCCTCCAAACATGGCTTCAGTCCTGTGGACCACATccattcctccaaacatggcCTCAGTCCTGTGGAACACATCTGCTCCTCCAAACATGGCCTCAGTCCTGTGGACCACATccattcctccaaacatggcCTCAGTCCTGTGGAACACATCTGCTCCTCCAAACATGGCCTCAGTCCTGTGGAACACATCTGCTCCTCCAAACATGGCTTCAGTCCTGTGGACCACATccattcctccaaacatggcTTCAGTCCTGTGGACCACATTCACTCCTCAAAACATGGCTTCAGTCCTGTGGAACACATTCGCTCCTCCAAACATGGCCTCAGTCCTGTGGAACACATCTGCTCCTCCAAACATGGCTTCAGTCCTGTGGAACACATccattcctccaaacatggcCTCAGTCCTGTGGAACACATTCGCTCCTCCAAACATGGCTTCAGTCCTGTGGAACACATTCGCTCTTCCAAACTGAAGATTCACCTGCAGCATGAGTGGGACAGCAGGAGGCTAAGCCAGTATTGCCATGGTAGTGGGCCCTTCACAGGTATagtagagagggaggcaggggaggtCTTTGGGCCCACAGTAGCAACATTTGGAATGCACGATGACACAGAGGAAGACTCGTCCTCTTCagaagaagaggatgaagatgcATCTGACCATGAAGAGTTTGACGATTTTATTCCACTTCCACCAACAAAACGCCTCCGGCTCATTGTTGGTAAAGACTCTATAGATATTGATATCGCATCAAGGAGACGTGAAAATCAGTCACGAACAGTCAATCCATAAGCTCTATGGGTCTTCATTTGTTAAGTCAATAAAAGTACAATCACATGCTGTTGTAAAATGTTAACTATTTTTGTACATGGTGGAACTTGGTTCGTTATTGTAGAATGTGTACATTTTAGGCAATTATTTTTATATCTTCAGCTTTATTTTGTACAATTGTTAATTATATTTAAAGCATTTTCTAGTTTGTGTTGGTAAACATGCTAAATGTTGCTCCACTGACATCGCAAGAATGGACCCTTTTGGGAACACACTGCAAACAAAATGTGCTTTTGTCAACATGACAGTGCATATAAAATAATAAGCATTTTATATATTGTTTTGAGAGCTTTTGAAAGGAACATAATTCTTGTTTCTTGCTGGAGGTATGTGAAAATGTTTGACTCCCAGTGATTCCTGGGAGCTGGTCTCTGATGTTTTAGTCCCGTTGTAATCACTCATTCCTTAATCAAAATGTGTTGGTGCTTGCATAATGATTCTCTTTGTTAACTTTTTAGTTTGTGTAGATGTGGTTATTTtggatgtttattttattttttgatcacatttttatttttctattCATTTCACTCAATTCTCGAACTGTATAATTTCTCAGTCTTTATTTAGCAATCACAAATTCAGAACTTACTTGGTCTGGCTTAGGTGGTGTAGATATTCAAACActtttttcactttgttattttgttcaccATTTGATCATCAGTTCACCTGTCTGCTGTGTCTGAATTGTGAATGGTGTGGTGCATGTCTCAACTTTTTAAATTGCTCTTTATATActggaccagtcaaaagtttggacacacctactcattccagggtttttctttattttatttttagtggctcaaataaatgcttcacagagttcaagtaacagacacatctcaacatcaactgttcagaggagactgcatgaatcaggctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203450 lncRNA downstream 42312 70691590 ~ 70691865 (-) True G179141
TU203443 lncRNA downstream 43543 70689253 ~ 70690634 (-) True G179134
TU203448 lncRNA downstream 48952 70684916 ~ 70685225 (-) True G179139
TU202753 lncRNA downstream 344592 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 345275 70386034 ~ 70388902 (-) True G178484
TU203508 lncRNA upstream 36802 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 100686 70842320 ~ 70842577 (-) True G179233
TU203570 lncRNA upstream 106997 70848631 ~ 70848836 (-) True G179235
TU203571 lncRNA upstream 107952 70849586 ~ 70849967 (-) True G179236
TU203575 lncRNA upstream 116666 70858300 ~ 70858508 (-) True G179240
XM_021570532.2 mRNA downstream 297 70713189 ~ 70733880 (-) False chka
XM_036954750.1 mRNA downstream 297 70713189 ~ 70733880 (-) False chka
XR_005037713.1 mRNA downstream 297 70715984 ~ 70733880 (-) True chka
XM_021570536.2 mRNA downstream 2822 70713189 ~ 70731355 (-) False chka
LOC110501848 mRNA downstream 91590 70552263 ~ 70642587 (-) False LOC110501848
NM_001165128.1 mRNA upstream 23911 70765545 ~ 70768009 (-) True arpin
XM_021570591.2 mRNA upstream 27506 70769140 ~ 70773277 (-) False fam169b
XM_021570598.2 mRNA upstream 27506 70769140 ~ 70773278 (-) False fam169b
XM_021570634.2 mRNA upstream 27506 70769140 ~ 70773278 (-) False fam169b
XM_021570649.2 mRNA upstream 27506 70769140 ~ 70773278 (-) False fam169b
TU202994 other downstream 173322 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1029778 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1142455 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 4041327 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 4343411 66375226 ~ 66390766 (-) True G173696
TU203498 other upstream 27524 70769158 ~ 70772536 (-) True fam169b
TU203550 other upstream 163738 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 185056 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 185056 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 201993 70943627 ~ 70944761 (-) True ttc23

Expression Profile