RNA id: XM_021570643.2


Basic Information

Item Value
RNA id XM_021570643.2
length 1462
RNA type mRNA
GC content 0.45
exon number 9
gene id fam169b
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70769140 ~ 70773282 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGATCCTCCCATTTCTTAAACCCATTGCTCCCCACCCCTACACTTCTCTCACACTTCTCTCAAGTCACTCCAGCGATGCAGCTTCCTATGACTAACTTGAAGTGCCTCTAAAAAACAATGTTTTGATGTAAGTTTTCCCTGTCGCCACAAGGTGGTAGTGTTATATAACATTCGTCGTCGTCCAGTTGACAGAATTTTCAAGATGGAATCCAATCGAACCTCGCAAACACAAAAGACAGATCTAGATTACAGGGCACTGAGTTCAACCTCTGAAAACATATTGACCTCCCTGGCGTCAAACACCTATGAAGGAGAGCGTTGGTTTCTACCCTCAAATGGCTCAAAGGTGGAGGTGACACATGACAACGTGGGCAGACTCCAGCTGTTCGGTGATGACGATCCACCTTGCACTCTGCTGACTCTGCACATGCCTGCAGATGGAACTCAAGAATGTTATGTTTTCACAGTGGTGGCCCTGAACCTGCATGGAAAGTGGTGGTCTTTAAATGATGTTTTGAAGACATCCACCAAATCCAGATCTGGTCTTGTGATGGTGCAGTCTGTTATGGAGAGAGTGATACTTTTCCTGCTTAGTCAAATCATTTTTGGAGTTTTGGAGAGGCCTTCAGGGGAAGAGATTTACTTCTCACCTCACCCAATGAGGGAATTTGGCAAAATTCTATGGCATAATGGGGAGGCAGTTGGATTCTACACCATCAAAAAGAAAGGAAGTCTGTGTGATGGATTCACTCGTCGAAGCTATCAGCTTTCTGTCCTTGACACTGTGTTTGTGAGGACTCAGTGCAGGAGGAGTGGTCTGGCACTGCAGATCCTGGCAGACTTCTGTAAATCCCTCCCCAACGAGGAAGTGATCGGAATCAGCTGTCCCATATCCCCAAGCATGATTAAAGtgtGCAGCAAGTATCTGCAGATGCACCAGGACCAAAGGGACCGGCTCTATGAGGTGGAAGCTCCTGGGGGCTGGGGCCAGAGACGGAACATATGGCTCAACATACAGCTCAACCGAAGCACAAACAGTGAGGCCCTCCCTAGGTTTGGATCAGGGTGTACCAATGCAAAGGCTCAAGTGAGGAGCAATGTCCAACAACATTGAACAAGGAGAAGAGAAACTATAAATAATCATATCATCAGATGTCTCTTGATTATTGGTTTTCTGATGGTTTGGCTGTGATGACAAACAGAAGTAAAAGAGAGAAGCTACCGGCAGACGAGGCTGAAATTAAACCTCAGACCACAGATGGATCATGGTCCTCAGAAGACATTTGTAGCAGGACATAGAAGGGCATTTGTGTCAGTTGTTATTTTGAGCAACTATAAGGTGCTGACTTAAGGCTAGAAATAATGGATGTTCAAAATGTTTAAAATTTTGGGACCTAAACTGCAAATAATTACATATCAGTTTCATATTCTGCTTAATAAAGTGATAACATCATCACTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203450 lncRNA downstream 77275 70691590 ~ 70691865 (-) True G179141
TU203443 lncRNA downstream 78506 70689253 ~ 70690634 (-) True G179134
TU203448 lncRNA downstream 83915 70684916 ~ 70685225 (-) True G179139
TU202753 lncRNA downstream 379555 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 380238 70386034 ~ 70388902 (-) True G178484
TU203508 lncRNA upstream 5156 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 69040 70842320 ~ 70842577 (-) True G179233
TU203570 lncRNA upstream 75351 70848631 ~ 70848836 (-) True G179235
TU203571 lncRNA upstream 76306 70849586 ~ 70849967 (-) True G179236
TU203575 lncRNA upstream 85020 70858300 ~ 70858508 (-) True G179240
NM_001165128.1 mRNA downstream 1131 70765545 ~ 70768009 (-) True arpin
XM_021570553.2 mRNA downstream 27505 70734177 ~ 70741635 (-) False kmt5b
XM_036954774.1 mRNA downstream 27505 70734177 ~ 70741635 (-) True kmt5b
XM_021570540.2 mRNA downstream 27506 70734177 ~ 70741634 (-) False kmt5b
XR_005037732.1 mRNA upstream 612 70773892 ~ 70775981 (-) True LOC118941475
XM_021570677.2 mRNA upstream 153352 70926632 ~ 70945359 (-) False ttc23
XR_005037743.1 mRNA upstream 331026 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 360985 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 648729 71422009 ~ 71429327 (-) False LOC110495486
TU202994 other downstream 208285 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1064741 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1177418 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 4076290 66692408 ~ 66692850 (-) True G174505
TU197536 other downstream 4378374 66375226 ~ 66390766 (-) True G173696
TU203550 other upstream 132092 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 153410 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 153410 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 170347 70943627 ~ 70944761 (-) True ttc23
TU203653 other upstream 224765 70998045 ~ 71035214 (-) False G179310

Expression Profile