Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00027840 |
| length | 468 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 3 |
| gene id | XLOC_013936 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 13099541 ~ 13186822 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006887 | exocytosis | biological_process |
| GO:0042391 | regulation of membrane potential | biological_process |
| GO:0048167 | regulation of synaptic plasticity | biological_process |
| GO:0048791 | calcium ion-regulated exocytosis of neurotransmitter | biological_process |
| GO:2000300 | regulation of synaptic vesicle exocytosis | biological_process |
| GO:0050806 | positive regulation of synaptic transmission | biological_process |
| GO:0098831 | presynaptic active zone cytoplasmic component | cellular_component |
| GO:0042734 | presynaptic membrane | cellular_component |
| GO:0048788 | cytoskeleton of presynaptic active zone | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0044325 | ion channel binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060503-893 | Predicted to enable transmembrane transporter binding activity. Predicted to be involved in calcium ion-regulated exocytosis of neurotransmitter; modulation of chemical synaptic transmission; and regulation of membrane potential. Predicted to act upstream of or within exocytosis and regulation of exocytosis. Predicted to be located in membrane and presynaptic active zone. Predicted to be active in cytoskeleton of presynaptic active zone and presynaptic membrane. Orthologous to human RIMS2 (regulating synaptic membrane exocytosis 2). |
| ensembl_id | ENSDART00000168503 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027828 | lncRNA | upstream | 681651 | 12417514 ~ 12420573 (+) | True | XLOC_013930 |
| TCONS_00029877 | lncRNA | upstream | 801333 | 12295450 ~ 12300891 (+) | True | XLOC_013928 |
| TCONS_00027811 | lncRNA | upstream | 2087366 | 11013622 ~ 11014858 (+) | True | XLOC_013918 |
| TCONS_00027795 | lncRNA | upstream | 2427618 | 10673830 ~ 10674606 (+) | True | XLOC_013910 |
| TCONS_00027787 | lncRNA | upstream | 2527235 | 10565683 ~ 10574989 (+) | True | XLOC_013905 |
| TCONS_00029878 | lncRNA | downstream | 110105 | 13230383 ~ 13249249 (+) | True | XLOC_013938 |
| TCONS_00027844 | lncRNA | downstream | 294398 | 13414676 ~ 13420477 (+) | True | XLOC_013940 |
| TCONS_00029879 | lncRNA | downstream | 511047 | 13631325 ~ 13635810 (+) | True | XLOC_013942 |
| TCONS_00027846 | lncRNA | downstream | 676314 | 13796592 ~ 13805873 (+) | True | XLOC_013943 |
| TCONS_00027851 | lncRNA | downstream | 989223 | 14109501 ~ 14110107 (+) | False | XLOC_013947 |
| TCONS_00027835 | mRNA | upstream | 175135 | 12915498 ~ 12927089 (+) | True | XLOC_013934 |
| TCONS_00027833 | mRNA | upstream | 298816 | 12762887 ~ 12803408 (+) | False | XLOC_013933 |
| TCONS_00027834 | mRNA | upstream | 299150 | 12801940 ~ 12803074 (+) | True | XLOC_013933 |
| TCONS_00027831 | mRNA | upstream | 420409 | 12649691 ~ 12681815 (+) | False | XLOC_013932 |
| TCONS_00027832 | mRNA | upstream | 420494 | 12649760 ~ 12681730 (+) | True | XLOC_013932 |
| TCONS_00027841 | mRNA | downstream | 255560 | 13375838 ~ 13397295 (+) | True | XLOC_013939 |
| TCONS_00027842 | mRNA | downstream | 290625 | 13410903 ~ 13420490 (+) | False | XLOC_013940 |
| TCONS_00027843 | mRNA | downstream | 290638 | 13410916 ~ 13413899 (+) | False | XLOC_013940 |
| TCONS_00027845 | mRNA | downstream | 300606 | 13420884 ~ 13426991 (+) | True | XLOC_013941 |
| TCONS_00027848 | mRNA | downstream | 874285 | 13994563 ~ 14035892 (+) | True | XLOC_013945 |
| TCONS_00027836 | other | upstream | 157258 | 12944850 ~ 12944966 (+) | True | XLOC_013935 |
| TCONS_00027817 | other | upstream | 1823695 | 11278413 ~ 11278529 (+) | True | XLOC_013922 |
| TCONS_00027800 | other | upstream | 2266603 | 10832092 ~ 10835621 (+) | False | XLOC_013912 |
| TCONS_00027788 | other | upstream | 2534738 | 10567371 ~ 10567486 (+) | True | XLOC_013906 |
| TCONS_00027758 | other | upstream | 3658346 | 9443772 ~ 9443878 (+) | True | XLOC_013889 |
| TCONS_00027847 | other | downstream | 713601 | 13833879 ~ 13833993 (+) | True | XLOC_013944 |
| TCONS_00027852 | other | downstream | 990693 | 14110971 ~ 14112909 (+) | True | XLOC_013947 |
| TCONS_00027859 | other | downstream | 1274601 | 14394879 ~ 14398687 (+) | True | XLOC_013950 |
| TCONS_00027862 | other | downstream | 1730555 | 14850833 ~ 14852304 (+) | True | XLOC_013953 |
| TCONS_00027879 | other | downstream | 2941548 | 16061826 ~ 16061961 (+) | True | XLOC_013963 |
