RNA id: XR_005037732.1


Basic Information

Item Value
RNA id XR_005037732.1
length 1578
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118941475
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70773892 ~ 70775981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCTCAGGTAAGATCACCTCTTTTGTGAGAACTTTGCAAACAAGGTGGCAGTGAGAGCGAGAACAAGAGGAAGAGATAGATGAAGAGCGAGAGGAGTAGAACCAGGACAATAACAAAGAAGGGGACCAAGCAATAGACAGAGACATATTTCTGAAGACATTAGAGCCAGTTTGGTGGACCATGTCATAAATCATTGCCTGACGATAAGGGAGGTTGGGCAGAGAGTCCAGCCCAACCTAAGTCGCTACACGGTAGCATCCATAATATGGACATTTAGACTGGAAAACAGAACTGCCAGACGACCTCCTGAGGGTGGAAGGCAACGTCTGTTCACCATGAACAGGAACTGGCCATTGTCAATCTAGTGTTGGCAAACAACACCATCCGCCTACATCAACTAATGAGAGCAAATTATCGCAGATTCCACAACATTCAATAATATCAACCGTGTCAGTATGTCGACACTCTGCCGCATCTTACGATGGAGCAGCTGTCCAGGGTTCCATTTGAGAGGAACAGTGTTAGAGTCAAAGACCCTCACTATGACTATGTGCAAAGAGTCCTGGACGTTGATGCAGCTGCACAGCCTCATTAGTTTATTTCATTGATGAAGCTGAATTCAATCTATTTAAAACCAGGCATTGGGGCCGAAACGTTATAGAACAAACAGCTGTTatgaatgtccctgggcagcgcAGGGGAAATATCCCCTTGTGTGCCGCCATTAGTCTGCAAGGAGTTCTCCATCACCATGTcaccctcggtccctacaatactgcacacataatcatatttctggatgcactACATAATGTAGTTGTACAGGACAGACCAGAGCAGCCCAGGTTTGTTGTCATCTGGGATAATGTTAATTTCCATCGGGTTGCTCTGGTCAGGGACTGGTTCACTAACCACAATAACTTCACAGTTGTACAGGACGGACCAGAGCAGCCCAGGTTCGTTGTCATCTGGGATAATGTTAATTTCCACCGGGCTGCTCTGGTCAGGGACTGGTTCACTAACCACAATAACTTCACAGTTGTATACTTGCCTCCTTACTCCCCATTTCTCAATCCGATTGAGGAATTATTTTCGGCTTGGCGTTAGAAAGTGTATGACCGCCAACCACATGCCCGCCTGCAAGCAATGGAATAGGCATGTGGAGACATTGAGGTGGGGTCAGTCCAGTGTTGGATATGGCACGCAAGGCGATATTTTCCCCGTTGCCTAGCCAGGGGGGATATTGCGTGTGATGTGGATGAGGTGATGTGGCCAGACCCTAACAGAAGGTGGGATCCATAAAACATCCACCCCATCCATTACAATactatttttttttgtttaccaTTGCACTGTAAttttactgtattttttttttcctgTGAGTTTACAGTAACATATTGTAttgattactgtactgtaattctACTTTGTGTTTATTTGTTGTTGTAAAAACCTGCAATGGCAAAAAATAAGctgtctacatttttttctgaagCCTTTCTATTTTGTGTTCATTGAAATGTGAGTAGATGTGCTGCACTGGAACAATCTTTCACAGAAGCCTGTATGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203450 lncRNA downstream 82027 70691590 ~ 70691865 (-) True G179141
TU203443 lncRNA downstream 83258 70689253 ~ 70690634 (-) True G179134
TU203448 lncRNA downstream 88667 70684916 ~ 70685225 (-) True G179139
TU202753 lncRNA downstream 384307 70389273 ~ 70389585 (-) True G178485
TU202752 lncRNA downstream 384990 70386034 ~ 70388902 (-) True G178484
TU203508 lncRNA upstream 2455 70778436 ~ 70778692 (-) True G179178
TU203568 lncRNA upstream 66339 70842320 ~ 70842577 (-) True G179233
TU203570 lncRNA upstream 72650 70848631 ~ 70848836 (-) True G179235
TU203571 lncRNA upstream 73605 70849586 ~ 70849967 (-) True G179236
TU203575 lncRNA upstream 82319 70858300 ~ 70858508 (-) True G179240
XM_021570612.2 mRNA downstream 610 70769140 ~ 70773282 (-) False fam169b
XM_021570575.2 mRNA downstream 612 70769140 ~ 70773280 (-) False fam169b
XM_021570583.2 mRNA downstream 612 70769140 ~ 70773280 (-) False fam169b
XM_021570627.2 mRNA downstream 612 70769140 ~ 70773280 (-) False fam169b
XM_021570643.2 mRNA downstream 612 70769140 ~ 70773280 (-) False fam169b
XM_021570677.2 mRNA upstream 150651 70926632 ~ 70945359 (-) False ttc23
XR_005037743.1 mRNA upstream 328325 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 358284 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 646028 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 648179 71424160 ~ 71429323 (-) False LOC110495486
TU203498 other downstream 1356 70769158 ~ 70772536 (-) True fam169b
TU202994 other downstream 213037 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1069493 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1182170 69591135 ~ 69591722 (-) True G177487
TU198454 other downstream 4081042 66692408 ~ 66692850 (-) True G174505
TU203550 other upstream 129391 70905372 ~ 70906254 (-) True G179215
TU203593 other upstream 150709 70926690 ~ 70938829 (-) False ttc23
TU203594 other upstream 150709 70926690 ~ 70944761 (-) False ttc23
TU203595 other upstream 167646 70943627 ~ 70944761 (-) True ttc23
TU203653 other upstream 222064 70998045 ~ 71035214 (-) False G179310

Expression Profile