RNA id: XM_021570677.2


Basic Information

Item Value
RNA id XM_021570677.2
length 2378
RNA type mRNA
GC content 0.48
exon number 11
gene id ttc23
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70926632 ~ 70945359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatcagggtctgtagtgactctgaGTTTCAgtcccttagaccgctgcgtcactcgaaAGCCCCAGTCCCGACAAACCATCACTATCACCACCGGTAACAAAATACACAAAATAAGGGTAGGCCAATCATTTAGTAAAAATTCAGCAATAGCCTAAAAAGCTAGCGTACAATAATCAACACGGCATGTTCCCCATCATTTATTTTCAGCTACATCCTGCCACCTTATCAGCTGTTGTCAGACACACCCGTGTCTGAGAAGTAGGCCTTATTTCACATATTCATATTTTTATTAATTCgagctaaaaaaaaaacaaagcctGATTTAACATAAAACAATTTGTCTGCACAAATATTTGCACGTGCATAAAGTTGGTCTGGTGCTGTAGAACATTGTCGGTCACGTGACATTTTATCAGGAAGCTACATTTAGCGCTTTTTGATTTTTAAGTTTTATATTAGTGGATGCTTGCTTGTATGAACACCCCGAGCGAACTGTTTGTGGTTATATGATGAATACAACCaacaaaataaaagttaaatgtCGCGCATTGATTTATGATGAATCTTTGCTGATTATGACGCATACTGCCGTATCCACGACAACGGATGTAAAAAAGAAACAAACATGGCATAAAATTATTCTGCAAaggtttctatttttttttttaccgaaAAATGAATTATAATTATCCAATGACAAACACACGCTCCAAACCAGGACTTGGATTAGTTGACGGTGGAGAATCTGATAAAGGACTGGCAAGTGTCTCTCAGAGAGGAATGGATGACACGGGAGAGTCGATGATGATGACTCCTGAGGAAAAACTTACCCAGTATGATAGCAGGGCCCAAGCCTTTGCAGACACTCAACAGTTTGATGCTTGTATCCAGGACCTTGTCCGCTGTGTGGCTCTTACAAGACTGGTATATGGAGATGGGCAATTGAAACTAGCCCAAGCCCATGTCAGACTGGCTAAAGCATACCTACAGTTTAAAGGCTGGGCAGTGCAGGCCCAGGAGCACTCAGCCAGAGCCAGTGACCTGCTCCCCTTCTGCACCCCCAACTCCACCAGCCGGGAGGACAGGGTCCACATTCTCACCTGTCTCCTCAACATATACCTAACACAGGGAGGCGCCACTCTGCTGCTGGCAAATCTCGAGGAAGCAGAGTATAATCATCAAAAAGCAGAGAGGATTGTGGTCGAACTTCATCAGCTAGGAGGCATGAGCAAGGAGGAGAAAATGGAGACTGAGTTTGAGATATCCACATCTCTGTCCAGGGTGTACCAGCGGCAAGGCAGGTCAGAGGAGGCCCTGGGTCAGTGTGAGAGTAGTTTGCAGCTGCTGGAGGGCTGGGAAAGGCCAGGTCAGGCCTGCTCCGTCTATAAGGACATGGCTGCCATCGAACAGGCCCAGGGCCGCCTCGACAGAGCTTTAGAGCACCTCTCTAAGGCTCATGCCATAGCTCTGAGTCAGAGCCCTGGGGGTCTGGATGGGGCTCACATCGCTCACAGCCTGGCCTTGGCCTACTCTACTGTAGCAGAGCCCCACCACAATGACTCAGCAGCACACTACTATGAGGAGAGTCTGAGTACATACAGGAGCTCCCTAGGCCCACAGGCTACTGTCACTCTCAACCTTCAGGATGACTACTGTcgcttcctcctcctcactgggCAGCAAGAGAGGTGTGTAGAGATCCAGAGGGAGTCCCTGGCCTTGAAGAGAGAGACGTTTGGTGACCTGAGTCCTGAGGTGGCTGACACTCTGCAGCTGATTGGAGGGGTGCAGATGACCCAGGGCCAGGTGAAGCATGCCCATAGGACCATGAGCAAGtgtctGGACATTCAGAGTATCCTGTATGGCCCTCAGCATAAGAAGACAAGAGCCACGCAGAAGACAGTGGACATGCTGGCCCAGGCGCCCGAGGTTgctgggagacagaggagggagggtagCCTGAAAACAAGGCCTCCTTTCTGTGCAGTCCTACCTTCTTATAGCAAGGCAGGAGGAAACGCCAACATGTCGGACTCCTAACATGCCATCAGAGCTGAGCTGGATGAATGAGCCTTGGCCCTCTAAGAAAATAAAGCCTCTCCCTTTGTCGCAAGGAGAAATTCTATGAATTGGAAATGAACCAAGAAGACCCCTGGCAATCCTTTCTGTTTTCATTGTGCATTCTCTGAGAAATTAGTGTCAGGCTGTTGGCAGGACTACGCAGACAGAACTCCTCAGAATGAAGGGAAGGTTCTACAGCTCAGGAGAAGAGCTGCAGCGGAGGACTCTGtcccttccctgtctctctgtgtgtacaaCGAAGACGTTCAATGTTATGTTTATGTTGTATTAATAAAGACTCAAACTCAGGAAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203551 lncRNA downstream 21377 70903945 ~ 70905255 (-) True G179216
TU203588 lncRNA downstream 51463 70874750 ~ 70875169 (-) True G179252
TU203585 lncRNA downstream 55630 70870800 ~ 70871002 (-) True G179249
TU203575 lncRNA downstream 68124 70858300 ~ 70858508 (-) True G179240
TU203571 lncRNA downstream 76665 70849586 ~ 70849967 (-) True G179236
TU203643 lncRNA upstream 41739 70987098 ~ 70987358 (-) True G179305
TU203651 lncRNA upstream 55274 71000633 ~ 71070204 (-) False G179310
TU203666 lncRNA upstream 61330 71006689 ~ 71007918 (-) True G179320
TU203656 lncRNA upstream 134154 71079513 ~ 71093345 (-) True G179311
TU203719 lncRNA upstream 155160 71100519 ~ 71100755 (-) True G179372
XR_005037732.1 mRNA downstream 150651 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 153350 70769140 ~ 70773282 (-) False fam169b
XM_021570627.2 mRNA downstream 153352 70769140 ~ 70773280 (-) False fam169b
XR_005037743.1 mRNA upstream 158947 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 188906 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 476650 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 478801 71424160 ~ 71429323 (-) False LOC110495486
XM_021570783.2 mRNA upstream 478801 71424160 ~ 71432121 (-) True LOC110495486
TU203550 other downstream 20378 70905372 ~ 70906254 (-) True G179215
TU203498 other downstream 154096 70769158 ~ 70772536 (-) True fam169b
TU202994 other downstream 365777 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1222233 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1334910 69591135 ~ 69591722 (-) True G177487
TU203653 other upstream 52686 70998045 ~ 71035214 (-) False G179310
TU203649 other upstream 89376 71034735 ~ 71070204 (-) True G179310
TU203749 other upstream 189175 71134534 ~ 71142184 (-) True LOC110495479
TU204130 other upstream 529013 71474372 ~ 71474979 (-) True G179754
TU205184 other upstream 1165609 72110968 ~ 72111663 (-) True G180716

Expression Profile