RNA id: TU203594



Basic Information


Item Value
RNA id TU203594
length 1073
RNA type TUCP
GC content 0.51
exon number 8
gene id ttc23
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 70926632 ~ 70945359 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GACAACGGATGTAAAAAAGAAACAAACATGGCATAAAATTATTCTGCAAaggtttctatttttttttttaccgaaAAATGAATTATAATTATCCAATGACAAACACACGCTCCAAACCAGGACTTGGATTAGTTGACGGTGGAGAATCGGTGTACCAGCGGCAAGGCAGGGCCGCCTCGACAGAGCTTTAGAGCACCTCTCTAAGGCTCATGCCATAGCTCTGAGTCAGAGCCCTGGGGGTCTGGATGGGGCTCACATCGCTCACAGCCTGGCCTTGGCCTACTCTACTGTAGCAGAGCCCCACCACAATGACTCAGCAGCACACTACTATGAGGAGAGTCTGAGTACATACAGGAGCTCCCTAGGCCCACAGGCTACTGTCACTCTCAACCTTCAGGATGACTACTGTcgcttcctcctcctcactgggCAGCAAGAGAGGTGTGTAGAGATCCAGAGGGAGTCCCTGGCCTTGAAGAGAGAGACGTTTGGTGACCTGAGTCCTGAGGTGGCTGACACTCTGCAGCTGATTGGAGGGGTGCAGATGACCCAGGGCCAGGTGAAGCATGCCCATAGGACCATGAGCAAGtgtctGGACATTCAGAGTATCCTGTATGGCCCTCAGCATAAGAAGACAAGAGCCACGCAGAAGACAGTGGACATGCTGGCCCAGGCGCCCGAGGTTgctgggagacagaggagggagggtagCCTGAAAACAAGGCCTCCTTTCTGTGCAGTCCTACCTTCTTATAGCAAGGCAGGAGGAAACGCCAACATGTCGGACTCCTAACATGCCATCAGAGCTGAGCTGGATGAATGAGCCTTGGCCCTCTAAGAAAATAAAGCCTCTCCCTTTGTCGCAAGGAGAAATTCTATGAATTGGAAATGAACCAAGAAGACCCCTGGCAATCCTTTCTGTTTTCATTGTGCATTCTCTGAGAAATTAGTGTCAGGCTGTTGGCAGGACTACGCAGACAGAACTCCTCAGAATGAAGGGAAGGTTCTACAGCTCAGGAGAAGAGCTGCAGCGGAGGACTCTGtcccttccctgtctctctgtgtgtacaaCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU203551 lncRNA downstream 21435 70903945 ~ 70905255 (-) True G179216
TU203588 lncRNA downstream 51521 70874750 ~ 70875169 (-) True G179252
TU203585 lncRNA downstream 55688 70870800 ~ 70871002 (-) True G179249
TU203575 lncRNA downstream 68182 70858300 ~ 70858508 (-) True G179240
TU203571 lncRNA downstream 76723 70849586 ~ 70849967 (-) True G179236
TU203643 lncRNA upstream 42337 70987098 ~ 70987358 (-) True G179305
TU203651 lncRNA upstream 55872 71000633 ~ 71070204 (-) False G179310
TU203666 lncRNA upstream 61928 71006689 ~ 71007918 (-) True G179320
TU203656 lncRNA upstream 134752 71079513 ~ 71093345 (-) True G179311
TU203719 lncRNA upstream 155758 71100519 ~ 71100755 (-) True G179372
XR_005037732.1 mRNA downstream 150709 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 153408 70769140 ~ 70773282 (-) False fam169b
XM_021570643.2 mRNA downstream 153410 70769140 ~ 70773280 (-) False fam169b
XR_005037743.1 mRNA upstream 159545 71104306 ~ 71105731 (-) False LOC118941478
XR_005037744.1 mRNA upstream 189504 71134265 ~ 71164057 (-) False LOC110495479
XM_021570764.2 mRNA upstream 477248 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 479399 71424160 ~ 71429323 (-) False LOC110495486
XM_021570783.2 mRNA upstream 479399 71424160 ~ 71432121 (-) True LOC110495486
TU203550 other downstream 20436 70905372 ~ 70906254 (-) True G179215
TU203498 other downstream 154154 70769158 ~ 70772536 (-) True fam169b
TU202994 other downstream 365835 70560522 ~ 70560855 (-) True LOC110501848
TU201996 other downstream 1222291 69693609 ~ 69704399 (-) True LOC110494902
TU201626 other downstream 1334968 69591135 ~ 69591722 (-) True G177487
TU203653 other upstream 53284 70998045 ~ 71035214 (-) False G179310
TU203649 other upstream 89974 71034735 ~ 71070204 (-) True G179310
TU203749 other upstream 189773 71134534 ~ 71142184 (-) True LOC110495479
TU204130 other upstream 529611 71474372 ~ 71474979 (-) True G179754
TU205184 other upstream 1166207 72110968 ~ 72111663 (-) True G180716

Expression Profile