RNA id: XR_005037744.1


Basic Information

Item Value
RNA id XR_005037744.1
length 1119
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110495479
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71134265 ~ 71164057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTAGAGCCTGCGGGTCAGTGGAAGGACGTGAGCAAGTGGAGCTTTCATTTCCTGTCAAAGAGGAGCAGCGAGGAGCTTTCAGAGGGATCAGTCGCAGCCTAATTGGGCCCCGGTGGGTGACACGGCAGCGTCGTAAATAAAGCAAACACAGTTTTAGTGTCTCTGCCACTGGACTCTTTAAACCTTCATCACAGAGCAAGCACTTCCAATGAAAGACCACATCTAATTACTTTGCTAGAGGTACATGCTTATGGAGGAAGACCAATCTGGGACTGTAGCACCACAATCTGGCCCGTCATTTGGATGTCGTTACTGAGTTGATTCCAGgtgtcgcttattttccccagtgtatttctccctgtgtttcctgtctctctgaccGGTGAGTGGGCCAGGAGAAACATGAAGAGCTGCTGTGACATGTGTAGTATAGACCAGAGCTGtatggagtacagtacagtataggagACACTCACCAGGTCCTGATTGCTGCTGATCCTCTCTGTGGTGATCTGGAAGTAGTTCCAGCCAATGAGCAGCAGCAGGAAGAGAGGCAGCATGAAGAGCTCCCAGGCCCACACCGTCACTATGAAGATCTGGAAGGACAGGAAGGAcagggtgggagagggggagactcATGAACAACACGGATACAGCACGGCGGGTGGCACTGCCCTCATACAACATGGGCCAGAACCCAAGCCCAGACATCACGGACACAATGTCCTCCTCCCACATCCCAGCATTCACCACTCAAAACAAACAATGGGTTTACCCACCACCCATGCCCCATGAACAACACAGCAGACTGCAAAGCTATGCCACGACACTATACAGCAGGGTACCCCAACTGGCGGCCTACGTTTTCTGAGcacaatgttttttttcattgttggacataaaagactgtaaaaacaccagaaaatcagCTTCAAGGTATTCCCACGCATAACAGAGAGatatgtgatcatatacaaatgtaagcaatgtTTGAAATATTATGTtctagtcaaatattatatctgttttggCTTCTTGtgatcaatttgcagtctacaaatgatttgtaattatgttctggtcCCCTGACCATCCGCACAAGAAAACAAATTGTCCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203726 lncRNA downstream 28751 71104079 ~ 71105514 (-) False LOC118941478
TU203722 lncRNA downstream 28751 71104329 ~ 71105514 (-) False LOC118941478
TU203725 lncRNA downstream 28751 71104329 ~ 71105514 (-) False LOC118941478
TU203724 lncRNA downstream 28751 71104412 ~ 71105514 (-) False LOC118941478
TU203727 lncRNA downstream 28751 71104412 ~ 71105514 (-) True LOC118941478
TU204124 lncRNA upstream 301132 71465189 ~ 71465424 (-) True G179748
TU204127 lncRNA upstream 305573 71469630 ~ 71469847 (-) True G179751
TU204131 lncRNA upstream 311067 71475124 ~ 71475405 (-) True G179755
TU204133 lncRNA upstream 312532 71476589 ~ 71476885 (-) True G179757
TU204144 lncRNA upstream 321769 71485826 ~ 71486035 (-) True G179768
XR_005037743.1 mRNA downstream 28534 71104306 ~ 71105731 (-) False LOC118941478
XM_021570677.2 mRNA downstream 188906 70926632 ~ 70945359 (-) False ttc23
XR_005037732.1 mRNA downstream 358284 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 360983 70769140 ~ 70773282 (-) False fam169b
XR_002469414.2 mRNA downstream 360985 70769140 ~ 70773280 (-) False fam169b
XM_021570764.2 mRNA upstream 257952 71422009 ~ 71429327 (-) False LOC110495486
XM_021570772.2 mRNA upstream 260103 71424160 ~ 71429323 (-) False LOC110495486
XM_021570783.2 mRNA upstream 260103 71424160 ~ 71432121 (-) True LOC110495486
XM_021570908.2 mRNA upstream 848201 72012258 ~ 72050185 (-) False LOC110495580
XM_021570929.2 mRNA upstream 848201 72012258 ~ 72050185 (-) False LOC110495580
TU203649 other downstream 64061 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 99051 70998045 ~ 71035214 (-) False G179310
TU203594 other downstream 189504 70926690 ~ 70944761 (-) False ttc23
TU203595 other downstream 189504 70943627 ~ 70944761 (-) True ttc23
TU203593 other downstream 195436 70926690 ~ 70938829 (-) False ttc23
TU204130 other upstream 310315 71474372 ~ 71474979 (-) True G179754
TU205184 other upstream 946911 72110968 ~ 72111663 (-) True G180716
TU206204 other upstream 1708687 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 1863327 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 1892185 73056242 ~ 73061313 (-) False G182494

Expression Profile