RNA id: XM_021570764.2


Basic Information

Item Value
RNA id XM_021570764.2
length 4414
RNA type mRNA
GC content 0.41
exon number 3
gene id LOC110495486
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 71422009 ~ 71432121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTCACTATATAGAGAGCTCAGTGAGCTGATCAGAGAGAAAGCATTCTGCTAGCCCAGCTCCTACAATTCGCAATCACTTCCTAACCTCACCCTTTTTAACATATTTGATCACTTTGATTCTCTGCTCTTTTTCAAACGATTTTTCCTGCATGAAGGAGGTTCTATAAGTTGTGatctttttgttttattatcaCTTGCTTGTCGGAGAGTTGACTTCATAGCATTGGCTTCAGCTGCGCGCTGCTGCTCGCACCACCTCACAAGAAAAGGGAGAAGCAGCAATATTTTTTTTACCAGTTGATGATTTTCTTCATGACTTGAGCTGGAACTTGATAGCGCTCTGCTGCTAGTGTGTAGCCTACATCAATTGTGTGTTTTATGCTGCTGTCACGTCGCCTATACGTTCAACTTACTGCTTCGTTTCTTGAATAGGCTACCTCATTTCATTATTGCAATCATTTgctcttttttttctccatttcgaGTCTCCTGAATGGCTGACTGCAAGCGCCCCTGGACTTGGCCTCTAAGCGCAATGCTGCGAATCAGCTCGCCATCACATCAGTTTTAAAACGTGTGCTTAGCATCGTCTATAACAGCAATACAATTTGACATTTTCGCCAGATTCAACGGACAATCGACATCAGTAAGCTTTtgtcatttatttatttgactatTAATTTTGATTACAGCGTGCTGCATTCTTTTGAGAGAACAAGCACGGCGAAACCAAAAACGGCAGACAAAAAGTTTCCTTACGTTGACTGATAGATATGGCAATGGTAGTGTGGAGAGGCTCCCAGGACGATGTGGCTGAGACCCAAGGTACCCTTTCTTCGCAATCTCAAGGAGGACTATCCCTTCCGACCCCTCAGTTGAATCTGTCAGGCTCTCAGGTCGCCCCTCCGACCCCTCAGACACCAGTCCAAGGACCCCCGAACAACACTGTACAGTCTACGCCGACAAACCAGACGACGCAGTCGGAGAAACAGCAGCCACAGCACATAGAATGCGTGGTTTGCGGGGATAAATCTAGTGGTAAACACTATGGCCAGTTTACTTGCGAGGGGTGCAAAAGCTTCTTCAAACGGAGCGTACGAAGGAACCTCAGTTACACATGCCGTGCCAACAGGAATTGTCCCATTGACCAGCACCATCGCAATCAGTGTCAGTACTGCCGCCTCAAAAAATGCCTGAAAGTTGGCATGAGACGGGAAGTTTCTCTTTTTACTGCAGCGGTGCAACGGGGACGGATGCCACCCACACAGCCACACCATGGCCAGTTCGCCTTGACAAATGGGGACCCACTCCACTGCCATTCCTACTTATCCGGATATATCTCTCTACTGCTGAGAGCGGAGCCCTACCCAACGTCCCGGTATGGCAGTCAATGCATGCAACCCAACAACATCATGGGCATCGAGAACATATGTGAACTGGCGGCCAGGATGCTGTTCAGCGCCGTGGAGTGGGCCAGGAATATCCCCTTCTTTCCAGACCTTCAGATTACTGACCAGGTGGCTCTTCTGCGGTTGACCTGGAGTGAGTTATTTGTGCTCAACGCCGCACAGTGCTCCATGCCTCTCCATGTGGCTCCACTTCTGGCGGCGGCTGGCCTACATGCCTCCCCCATGTCTGCGGACAGAGTGGTCGCATTTATGGACCACATTAGGATCTTCCAAGAACAAGTGGAAAAGCTGAAAGCTTTGCACGTTGACTCTGCTGAATACAGCTGCTTAAAGGCAATTGTGCTCTTCACATCAGATGCTTGTGGCCTCTCAGATGTGGCCCATGTGGAAAGTTTGCAAGAGAAGTCACAGTGCGCCCTGGAGGAATATGTTCGGAGCCAGTATCCCAACCAGCCTACACGATTTGGGAAGTTGTTACTTCGCTTGCCTTCGCTGCGCACAGTCTCTTCATCGGTCATAGAGCAATTGTTTTTCGTCCGATTGGTAGGTAAAACCCCAATTGAAACCCTCATCAGGGATATGTTGCTTTCGGGGAGCAGTTTTAACTGGCCCTACATGTCAATTCAGTAAGCAGAAGGAATGAACAAAGGGGGTAAGACTACAATGGTTAGCGCTTCTTTTGTTGAAGGAAAACGGCTGTTACAAGAGCTTGCTTTCACAAAGAAAGacattgttgtaaatgactgtgaATTTTAAAATTGAGACATTCTGCgaactttcaaaatgcagataAAAGCTCCCAGTGTCATTCGGAACAACTTGCTTCTTATCCATTTTTAAGAAAAAAGAAAACGAAAAAAAATAAGGAAAAGGATTTTGGTAATCCTCAAAAGGAAAATGGAAACTATAAAGTGCATTTAAAATGAACATTTGGAAAAACTTAGGAGAAAATAAAAAAGTACGTTTTCTTTTTCCAAATTACTTGTCCTGTGTCCATGTATCTAGCTGTTTTTTGTACTTTTCTTTTGTTCCTCCTTTCTGGTTCCAAACCGGCCTATGTGATTCTGTAGTACAAGTGGTGTTCTTTTCTAAAACCATGACTTCTTTTGAAACAGTTAAGTAATGTAAAATGTTCTTCAAGAATTAAAACTAAATCCACAGCAATATAGGAAAATGCTTATAACTACATGCTTAATGCTGCATACGCACTTACTCTTAAAATGACACACAATAAACTGGACAAGGGTGTTTTTTCGGAGTTCAGGTTCAACTTTCTGACCCAGCTAAATCATTGCTCTTTCCAATTGAGTATAGACTTTATGTTCCAGGGTTGCCCTGTTTTGTCACTGCTTAGTTGAGCCAGTCGAACCACATCTGCTCTTAACGTTTCATAGAAGATTCAAGGCAAAACAGCTATTGCTGAACAGTGTGTGATATCGGTTACCAGTATGTAGGCTATGCTTTATGAACCCATTTCAACTTTGTGCATCCCCACATGCACCCAGCTCGAAATGTTTTGCATCAATTTAAAGacagttaaaaaaaatgtatgaagcCTCGCTATTGAAGGGTGATTGTGGCTTGTAAATGTAGATGCAAatgaattattattttaatttaggCAGGTAATGCATATAACATTGTGTCTTGCAATGTAGGCCTAAACATCAATGAAAACATCTAGCCATACAATACCTTATTTTGAAATTGGAAAGGTCAAGGGTCATATACCTTTAAGTACAGCTGGAATAGTGTTTAATAGCAGTATTATTATGACATCCCTGAAATGTCACCCTCTATACACTGCAAGCATTAAGTGCCTGAAAAGCGCGAAGTAATTTCTAATCAAAACGTTGTTTCAGTATACAACTTTGGGAACACTATTAGATTTGAAACTTCAGTCTTATGCTTGTGTATTTCACTTGAAAAACGTTAATTAGAGGCAGTATTGTTGTAAATATAGGTCAATTCATTTCAATGAATTTTCCTTTATACAAAGTATGTGATTAAGAAAAACTGTGTTTGCTATTTTTTCGGTAATACAACGTCTTCAATTCAGTGGCAGACTTAGCTAGTATCACTGAAAGTTATGTTTGTAATGTATATACATATTAAGACAAAAATGTTTTCTTTTTCATGTATTTAGACTGTGAATGCATGGCCACAGGTCGCTAACCTATTTTACCTTTGATATatataaatgtaaatgtttttgacTGTATAGATATAATCTGTGCATTCAGTACACTAGCCCTTGTATTTAAAAAAGAAACAAAATGTTCAACAATAGGCTAAGACTAAACAGGGTGAGCTGGTCTGGAAAGCTATTTTGACTTAGTGTTCTGCTCCTTTGGTCTGTGACAAATgccttgtgtgcgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagcgagaataggtgagtgagagagagagagtgtgtgtaagagtgtgtgtgaaaAAAATGTGTCCTTGTTTTTGGGGCTTTTCTTCAACACACGAGACACCATGTTGTGGTTGGATAAAAAGGGATCATATTGTGTAGGTGATTGAACAGTGCTCTTCGGCTGTTTCCATGCCACATATGGACCAGAGAATGATACATGATTGTAATTATGAACAGTTTAAACTGACCCacgtttttatataaatatataaaaatatatgacTGCAGGGTATTGATAACGTATAGATACTTTTTTTTAATGATtatgattattatgattattaatTGCAAGtgatatatgtgagtgtgtgtggaagTTTATAGTTGAACAcaattcttgtttgtttgtgttagcTTATTGTAAACAAGCATTCTGCTGTAAATTTGTTCTTGGTATTAAATTATAATTTATGAATTTGAAAAAAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203726 lncRNA downstream 316495 71104079 ~ 71105514 (-) False LOC118941478
TU204124 lncRNA upstream 35862 71465189 ~ 71465424 (-) True G179748
TU204127 lncRNA upstream 40303 71469630 ~ 71469847 (-) True G179751
TU204131 lncRNA upstream 45797 71475124 ~ 71475405 (-) True G179755
TU204133 lncRNA upstream 47262 71476589 ~ 71476885 (-) True G179757
TU204144 lncRNA upstream 56499 71485826 ~ 71486035 (-) True G179768
XR_005037744.1 mRNA downstream 257952 71134265 ~ 71164057 (-) False LOC110495479
XR_005037743.1 mRNA downstream 316278 71104306 ~ 71105731 (-) False LOC118941478
XM_021570677.2 mRNA downstream 476650 70926632 ~ 70945359 (-) False ttc23
XR_005037732.1 mRNA downstream 646028 70773892 ~ 70775981 (-) True LOC118941475
XM_021570612.2 mRNA downstream 648727 70769140 ~ 70773282 (-) False fam169b
XM_021570908.2 mRNA upstream 582931 72012258 ~ 72050185 (-) False LOC110495580
XM_021570929.2 mRNA upstream 582931 72012258 ~ 72050185 (-) False LOC110495580
XR_005037756.1 mRNA upstream 588555 72017882 ~ 72050185 (-) False LOC110495580
XM_036990293.1 mRNA upstream 641154 72070481 ~ 72090783 (-) False LOC100135856
NM_001124241.2 mRNA upstream 641882 72071209 ~ 72090679 (-) True LOC100135856
TU203749 other downstream 279825 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 351805 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 386795 70998045 ~ 71035214 (-) False G179310
TU203594 other downstream 477248 70926690 ~ 70944761 (-) False ttc23
TU203595 other downstream 477248 70943627 ~ 70944761 (-) True ttc23
TU204130 other upstream 45045 71474372 ~ 71474979 (-) True G179754
TU205184 other upstream 681641 72110968 ~ 72111663 (-) True G180716
TU206204 other upstream 1443417 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 1598057 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 1626915 73056242 ~ 73061313 (-) False G182494

Expression Profile