RNA id: TU204900


Basic Information

Item Value
RNA id TU204900
length 3372
RNA type TUCP
GC content 0.36
exon number 4
gene id LOC110495604
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72059717 ~ 72065199 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCCTCCCTTTTCCCTGCACGCATTCCAAATGAAATCATGAAGGGATTGTAGGCTACTAGAAGCAACGGGCTTTGACAGCAGCTAGGAAAAACTGAGAGCAGCGACCATTCAGGAGATAATTGTTAGGTTATACAGATGGATAGGCTATTTACACCGTTTTAAGGAACCGGTTCGTTTGACGAGTGGATGCGCAATTTTAAACACTTCCTTGAAATGTCACAGAATGTCATCATCGCCAATCTTGAATCGCATATCTTCCTTGGCTTCGTGAAAGAAATTTAGAGAGAAAGAAACGACGATTATTTTCACAAGCAATTTACTCTTATTCTTTCAAGCAGGATGGTTTCATACAGTTTAATATTCACTTTGGTTATTGCTGCGGCATGGAAAGTTATAGGTGAACCACAAACTGTGTCTTCACCCGCAACGCAGTTAAATTCAACACCAACCCACCATGGAGGGGATTTGTCAAATAATATCACAGATCATGCACAGACCGAATCAAGAATGTATTCAATATTACAATATCTTCCGACTCTTAAAAATATTGTAATTATTATCTGCGTGCTAACAGCTGTTCTCATCACGTGCTTGGTCATCAAAGTGATCAGATCTGGAAGGAGAATAAGGAAAACACGAAAGTATGACATAATCACTACACCAGCAGAGCGAGTAGAGATGGCTCCTTTGAATGAGGAgaatgaggaagaagaggactCCACCCTCTTTGATGTCAAGTACAGGTGAATGCCAGCATTAAACAGAGGATGTTGGATTTTAATCCCACCATTTTCTCCAGTGGGAACACAACCCAAGGATATGTGGCCTAATGCAGTCTCCAGATGTCTTCAGTGTTTGGTAACTTTTGTCAAGTCTAGTCAAGTTTCCGATCTCACCGATATTTGCAGAAAAGGTTACCTCTGTGGTCTGGTATTCTAGAATGTATTCTGATTGTAAACATGCTGTATTTACAATCCTTTTGTACACATCAGACACTTCCAACATCAGAGGGATGTTGCCAATAGATTGTGAATTGGGGCTAGCTCAGTAAATTTGAATCTTCTTTAAGCAAAAATAAAATGCATAGAGAACATTTGATGGCTTTTGCTGTCTGCAAGGCAATCCTTTTGCCGTCCTGTAATGCTTATGGTATATTATTCACTAATAATATAAGATACAATCCTCAGAATAATATTTTATATAAATACTTATTTACTCGTCTGTTGCAAAGATTATTTTAATTGTCTTATTATTCTTATTCCAAATATTACACTAACCACTCAAATGTGCATACACTGTATACTGTCTGAGGCTTTCTGTCCTCTGTCTCATAGTTTGTTTGGGTGCATATTTTTACTGTATGTGTTTGAGAGTCTCCCATTTTGCTGCTATCTCTAACCTGGGGTTGGATAAGGTTTCTAGTGCATATGTTTGGTCACAATGACAAACAAGTATATTGAAGAACAGGTCATAGAATATACTTTGTATGATTTTGGAAATACATGTACGTTTCTCAAAGTTGAATTGTAAAATATATCAATGTATATTTGAATATACAAACAGTATCTCATCTTTTTTTACCATTATTACCTTGCCAGACATGTTCCGAGACCGGGTCATTGGTGTGTTCTAGTGAATGTAATTACACATAACAGGCAAATCCCGGTATTGCTCACACAGGCTTATTAAAAATGGTAACCTTAACCCAGGACTTTCGTGGCATGTTCCACATTTACTCAGAACTTGTGGAATTAATTATTTGATTGGTTCCATGCCACAATGATTGGCTTTGCGACTAGACTGATGTGTGATAGATATTTCTTTTAAGTGAAGGAATAATCATGGATAACTAACTACTCTTACAAAATGAATGCTTTTAAGCTGTTGATGGAAGAAATAGTGTGAGAAGGGAGGGTTATGACTGTTGTAATATAAATGTATGCAGATTACTTTCAAATGAAATTGGCACCTACCTCTTTCCTGTAATAATTGAGAAAGTTGAAACCCCAAACAACGTCCCACCATTTAGACAGTTGCAGTATAATAAACTGACCAATGGACTGTCAAACTTTGGTTTTTCTATTTCAAAATAGAAGCAATTGAACAGCcaatgtgtatgtacagtgccttttaATTGGACCATACATCAGTAAATGGAGTGCATACTTTCACATTCAGAAGCTTTACATTAGCCTACCCCTACAATTAAAACACATTGTTGGACAAAAGTTACCCATCAACTCAGGTATTTCAAGGCACCTCTGACGTGTCGCTCTAAATAGTCTAACACATGAGGAATACTTTTGATTGAAACAAAAGTACATGTTTAAAGAATCAGTTAATATGAAGAAATAACTCAAAGAATCATTCCATCCTTAGATAATGTGGTCTTTAGGTCCTCTGGAAATGTAGTGTAGTAATATAAAAAACGTGTTGAATCCTTAATGTCACCTTGTCTGTTTAACCAGTTTTGTTATCTGAGAGTACACTATCAACTAGAGTACATACGGGGGGTTTCCAGGAAGTTCAAATGGAATTAATTTGAGTTATCTGATAAGTAACACCAttagaggaacttaaaacgttctgTTCAATCTTCCTATGCCACATTGTCAGAGAGCACATTATGATTTTAAGCTGTTAACTTGTTTTCCATTTAGATTTGTATTTTTCAGCCTGCAGTTAAAATAAATTACTGTTGAAGATTGACAGTAAGATTCAAGTTTTTCATTGTATACAAATATAAAAAACTTGAGTCCAGTTTGGATTATTATTTTATGTTTCAGTCATCAGAGGATTTTAATTTAGGATATTTTGAGTGTGATTTAGTTAATTCTGTAGTTTTCAATAATGTACAGGTAGTCTTGTTTCTTTGATTGTATTCTTGATATATTTCTTTTAGATGCATTGTTGCTAAAACATTTCCACCTTCCTCATTTCTCTCCTCTGCAATTGATTTCTTCTACAAAATCCTCTCTAAAAGGATAATAGTGTGAATGTTTCTGATCTTCAGTGCAGTGTTTGAATGTACAAGTAATTTATTTTGGGGTTTATGTCTCGTAACAATATTCATTTGAACTTTATTGAGAAACTTTTATTTGAAATGAATATTCTGGTTAAGGCAGCTTTTCCTCTGGTAAATTTAATCAAAGCTGTCATACTATATCTAGATCATTGCTAATTACCCTCATCCCAACTCTAAGCCAAAAATGCCTAAGTGAGAACCATTGTTTAATGCTTCTTTTGAAGAATATAGAAAGCATGTCTAGCTTGGTTTTTCTGTcacaaaaaatgtaattgtaGAGTTAACTACCCACTGGCTGGCTCCATGTTTTTTTTCCAAATAAAAGTACTCTCCCTCACCATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204903 lncRNA upstream 7177 72052304 ~ 72052540 (+) True G180481
TU204907 lncRNA upstream 13085 72043386 ~ 72046632 (+) True G180483
TU204881 lncRNA upstream 41216 72018103 ~ 72018501 (+) True G180468
TU204871 lncRNA upstream 69161 71990078 ~ 71990556 (+) True G180458
TU204869 lncRNA upstream 71077 71988309 ~ 71988640 (+) True G180456
TU204925 lncRNA downstream 10738 72075933 ~ 72076159 (+) True G180501
TU204926 lncRNA downstream 13879 72079074 ~ 72079455 (+) True G180502
TU205281 lncRNA downstream 184448 72249643 ~ 72249876 (+) True G180809
TU205316 lncRNA downstream 205798 72270993 ~ 72271320 (+) True G180844
TU205327 lncRNA downstream 214008 72279203 ~ 72279529 (+) True G180855
XM_021570893.2 mRNA upstream 51454 71995694 ~ 72008263 (+) True LOC110495562
XR_005034536.1 mRNA upstream 76896 71961719 ~ 71982821 (+) True LOC118937292
XR_005037751.1 mRNA upstream 99618 71944685 ~ 71960099 (+) False LOC118941481
XM_021570855.2 mRNA upstream 287471 71766525 ~ 71772246 (+) False LOC110495533
XM_021618405.2 mRNA downstream 185689 72250884 ~ 72253809 (+) False LOC110533853
XM_021570969.2 mRNA downstream 271607 72336802 ~ 72343356 (+) True LOC110495632
XM_036954987.1 mRNA downstream 823122 72888317 ~ 73030225 (+) False tln2b
XM_036954991.1 mRNA downstream 823122 72888317 ~ 73030225 (+) True tln2b
XM_021571018.2 mRNA downstream 990933 73056128 ~ 73066027 (+) False LOC110495666
TU203144 other upstream 1251813 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 1946277 70107286 ~ 70113440 (+) False G177812
TU201174 other upstream 2602284 69456558 ~ 69457433 (+) True G177067
TU200792 other upstream 3101831 68956263 ~ 68957886 (+) True G176725
TU200669 other upstream 3198349 68860838 ~ 68861368 (+) True G176612
TU205289 other downstream 188243 72253438 ~ 72253727 (+) True LOC110533853
TU206530 other downstream 1276185 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 1276512 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 1511570 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 1541697 73606892 ~ 73610237 (+) True G182139

Expression Profile