RNA id: XR_005037757.1


Basic Information

Item Value
RNA id XR_005037757.1
length 598
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC118941485
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72300332 ~ 72309971 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTAACAACACAGTCTGTGATTGGCTAACAACATTTAGGTCTGTATACAGCGAGATAAGATAACATACCACGCCATAAGGTGTTGAGGGAAAGACAGACTACCTATAGATTGGACATAATATTTTCTAGGCCATTAGCGATAACAGGAAGCTCGAGGGGCTACACTCGGAGGCTACTTCGGAATGTCGGCTTGCATGGGAAAAATGaatggaccattattcTGCACCTATATCGAAACAGGAGCAGCGGGAAAAAATGTAATATCATCCATGCACagaaatagcgaatggaggatgcttttccctgtgttttttcccccatgccagccagCCCCTGCTGCTTCACCTTTGAGGAACCAGCAGGAGAGACACCGAAGCGTGGTGATCCGCCTCAATGTGAAAATGCTCCAGGGGGAGTCTGCCTGAGTAAAGACTGAGTAAATGTGTCAGCGTCAAtattaaactatgaaataatatttgttctgtaattgtaacaacatagaactcaagtccttttgttcacctgacctagaattcctcacaatcaaatgccgaccgtattatctcccaagagaactctcctTGGTTATCGTCACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU205346 lncRNA downstream 6317 72293730 ~ 72294015 (-) True G180874
TU205318 lncRNA downstream 28641 72271394 ~ 72271691 (-) True G180846
TU205299 lncRNA downstream 41283 72258849 ~ 72259049 (-) True G180827
TU205275 lncRNA downstream 53555 72246514 ~ 72246777 (-) True G180803
TU205171 lncRNA downstream 200447 72099119 ~ 72099885 (-) True G180706
TU205370 lncRNA upstream 3440 72313411 ~ 72314173 (-) True G180897
TU205416 lncRNA upstream 37060 72347031 ~ 72347380 (-) True G180941
TU205419 lncRNA upstream 38403 72348374 ~ 72348607 (-) True G180944
TU205427 lncRNA upstream 39897 72349868 ~ 72350136 (-) True G180946
TU205465 lncRNA upstream 65237 72375208 ~ 72375407 (-) True G180982
XM_021570960.2 mRNA downstream 124885 72107576 ~ 72175447 (-) True LOC110495618
XM_021570953.2 mRNA downstream 125406 72106006 ~ 72174926 (-) False LOC110495618
XM_036990293.1 mRNA downstream 209549 72070481 ~ 72090783 (-) False LOC100135856
NM_001124241.2 mRNA downstream 209653 72071209 ~ 72090679 (-) True LOC100135856
XM_021570908.2 mRNA downstream 250147 72012258 ~ 72050185 (-) False LOC110495580
XM_036954961.1 mRNA upstream 146895 72456866 ~ 72532821 (-) False roraa
XM_036954955.1 mRNA upstream 146895 72456866 ~ 72744512 (-) True roraa
XR_005034538.1 mRNA upstream 464093 72774064 ~ 72775649 (-) True LOC118937294
XM_021570993.2 mRNA upstream 562000 72871971 ~ 72873771 (-) False c2cd4a
XM_036954980.1 mRNA upstream 562000 72871971 ~ 72877673 (-) False c2cd4a
TU205184 other downstream 188669 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 825353 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 1158148 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1230128 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 1265118 70998045 ~ 71035214 (-) False G179310
TU206204 other upstream 562773 72872744 ~ 72873745 (-) True c2cd4a
TU207073 other upstream 717413 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 746271 73056242 ~ 73061313 (-) False G182494
TU207075 other upstream 766056 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 1034979 73344950 ~ 73345847 (-) True G182708

Expression Profile