RNA id: XM_021570993.2


Basic Information

Item Value
RNA id XM_021570993.2
length 1627
RNA type mRNA
GC content 0.50
exon number 2
gene id c2cd4a
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 72833292 ~ 72877678 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCAGTCGCTTACAGAGGAGCTGGTCTTAACAAGAGAGATTCTGAGCCTGCTACTTAGAGACTTTTACTACTACAATCGTTATCTATCTCACAAGCCGGTCTGTAAGGACACAGTGTTGGATTTACTGACATCTCATTTACACAAGTTACCAAGCCCTATCAGAGAACTCATGTGGGTGGTGGAGAAGATCCGTGTGTCCGTGGAGAGAACCAACCTGCCTCTCCCCTCAACGGAATACAGCTTCAGGATCGGAGATATGTTTGGAGAGAAAGCTGAGAAACACAAGAGACTTTCCCTGTGTCCTAATATTATCACCCCAGACACTATCCCAGAGTTTTGCATCCCTCCTAAGATCCCATCGTTCCAGGAGCCGAAAGGTACAGAGCAGAGCCGCCAGGCCCCCATCATCAGAGTGTCCCTGTGTGAATCTGAGAGGGGGAGCCCTAAGAGGGAGGCCCCAACACGAAAGCTTATCAGCCCACACATCATCCAGGTAGAGAATGTGGATGAGAGCCCTTATGACTGTAGTGATGAGGAGACCACCAACGCAGACCCTCAAAGCCAGGCAGCACTCTCCTTGCCCCACAtggccaaagcccagacttgctATGGTTTCTGTACCCTGCTGGAGAGCCCCCACACCAGGAGGAAGGAGTCCCTGTTCCACAATGACCCTGGCTCCTGTGGCATACCGCTGCTGCTCCCCAGGAGCAGGTCCAACACTTGCCCCAGagtctccccctctacctccccttcctcctccccttcctccttcagTCTTCACACCCTGACCTCCAGACTCTCGCCCAGAGGTTATACACTCAACAGACAGGGCACACTGGACAGTGACACAACCTCCTCAGCTGAGTCCTCCCCTTTCAGCTCCCCAATGCTGAGCAGGTCCCCACCGAAGTCTTCCCTCTTCAAAACACTGAGTCATGAAAGGCTTCTTTCCAGAAACATCAGGAAGACTGTGGTGTCCAGAAACAACTCCCTGTCAACAGACGAGGGCAGCTCCACAGACAATAGTCCCAATTTCATGAGGAGGGCGTCAGATGGGCTGGTAGAAGGCCTTCCACCAAGCTTCGGTCTGGCTCCTCCTACCATCTTCCCCATAGACTTGGTTCTGCACAGGGAAAGGGTGATGAGGGAGAGCATGGTTCCTATAGGGAAGGACGGCACCCTGCGCCTCTCTGCAGAGTACTGTCCTGATAACCAGAGGCTGCGGGTGCGGCTCATCAGTGCTGAGGGACTATACACACACTCGGTGGACCCCAAGAGTATCAACTGCAGTGTCAGCCTTTCCCTGGTGCCTGGAAAGGTCCAGAAGCAGCGTAGCACAGTCATCAGGAAGAGTCGTAACCCTATCTTCAATGAGGACTTCTTCTTTGATGCCATCTCAGAGGAGGACCTCTGCCAACGCTCTCTGAGATTTAAAATTGTCAATAAAATGTCCACTATGAAAAGAGACTACATTCTGGGGGACGTTGAACTTCCGCTCACAAGCATTATCACTTTATAACTTAAATAAtttgtcttatttatttaaattgtatttattatcaCTTTTATACTGTGAGCAGAGATTTTATACTGTATCTAATAAATCCTTTATTAAAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206048 lncRNA downstream 107568 72764193 ~ 72764403 (-) True G181545
TU206047 lncRNA downstream 108294 72763470 ~ 72763677 (-) True G181544
TU206032 lncRNA downstream 114265 72757448 ~ 72757706 (-) True G181529
TU206023 lncRNA downstream 119482 72752264 ~ 72752489 (-) True G181520
TU206018 lncRNA downstream 122106 72749634 ~ 72749865 (-) True G181515
TU206997 lncRNA upstream 51954 72925725 ~ 72928284 (-) False G182443
TU207001 lncRNA upstream 52566 72926337 ~ 72927297 (-) False G182443
TU207002 lncRNA upstream 52566 72926337 ~ 72928284 (-) True G182443
TU207048 lncRNA upstream 113393 72987164 ~ 72989040 (-) True G182487
TU207085 lncRNA upstream 128325 73002096 ~ 73089478 (-) True G182506
XR_005034538.1 mRNA downstream 96322 72774064 ~ 72775649 (-) True LOC118937294
XM_036954955.1 mRNA downstream 127459 72456866 ~ 72744512 (-) True roraa
XM_036954961.1 mRNA downstream 339150 72456866 ~ 72532821 (-) False roraa
XR_005037757.1 mRNA downstream 562000 72300332 ~ 72309971 (-) True LOC118941485
XM_021570960.2 mRNA downstream 696524 72107576 ~ 72175447 (-) True LOC110495618
XM_021571110.2 mRNA upstream 202249 73076020 ~ 73078083 (-) False LOC110495704
XM_021571107.2 mRNA upstream 202249 73076020 ~ 73078090 (-) False LOC110495704
XM_021571097.2 mRNA upstream 202249 73076020 ~ 73078109 (-) False LOC110495704
XM_021571138.2 mRNA upstream 272450 73146221 ~ 73157311 (-) True etfa
XM_021571186.2 mRNA upstream 302950 73176721 ~ 73272412 (-) False scaper
TU205184 other downstream 760308 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 1396992 71474372 ~ 71474979 (-) True G179754
TU203749 other downstream 1729787 71134534 ~ 71142184 (-) True LOC110495479
TU203649 other downstream 1801767 71034735 ~ 71070204 (-) True G179310
TU203653 other downstream 1836757 70998045 ~ 71035214 (-) False G179310
TU207073 other upstream 153613 73027384 ~ 73066724 (-) False G182494
TU207071 other upstream 182471 73056242 ~ 73061313 (-) False G182494
TU207075 other upstream 202256 73076027 ~ 73078379 (-) True LOC110495704
TU207306 other upstream 471179 73344950 ~ 73345847 (-) True G182708
TU207489 other upstream 802441 73676212 ~ 73676423 (-) True G182882

Expression Profile