RNA id: XM_021571063.2


Basic Information

Item Value
RNA id XM_021571063.2
length 2504
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC110495666
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73056128 ~ 73069598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAAGGCACATTCAAGAAGAGCTTGCACTCCAGCGCAACGTTCAGTGAAGCACAGACGCACAGTCTCTCTCCTCGGGTCTCTTTCGAAACATTTGGTGGAGCCAAACAAAAAATAAGCAGCCATGGATGCCATCAAGAAGAAGATGCAGATGCTCAAGCTCGACAAGGAGAATGCCTTGGACAGAGCTGAGGGAGCCGAGGGAGACAAGAAGGCAGCAGAGGACAAGAGCAAACAGttagaggatgaaaTAAGTGAGTTGGAAAAGAAATTACGGATCACCGAAGATGAACGTGATAAAGTGCTTGATGAGTTCCAAGCCGCCGAGGAAAAGTTTCTGAACGCCGAGGAGGTGGCCACCAAGgCTGAGGCCGATGTCGCTTCCCTTAACAGACGTATCCAGCTAGTTGAGGAGGAGTTGGATCGTGCTCAGGAGCGTCTGGCAACTGCCCTGACCAAGCTGGAGGAGGCTGAGAAGGCGGCTGATGAGTCCGAGAGAGGCATGAAGGTCATTGAGAACAGGGCCTCCAAGGATGAGGAGAAGATGGAGCTGCAGGATATCCAGCTGAAGGAGGCCAAGCACATCGCTGAGGAGGCTGACCGCAAATATGAGGAGGTTGCCCGTAAGCTGGTCATCATTGAGAGTGATCTGGAACGTACAGAAGAGCGCGCCGAGCTTTCAGAAGGCAAATGCTCTGAGCTTGAGGAAGAGTTGAAAACTGTGACCAACAACCTGAAGTCACTGGAGGCCCAGGCTGAGAAGTACTCACAGAAGGAGGACAAGTACGAGGAGGAGATCAAGGTCCTCACTGACAAGCTGAAGGAGGCTGAGACTCGTGCTGAGTTCGCTGAGAGATCAGTAGCCAAACTTGAGAAGACCATCGACGACTTGGAAGAGAAACTGGCACATGCTAAAGAAGAGAACCTCGATATGCACCAGATGCTGGACCAGACTCTAATGGAACTAAATAACATGTGAAAGCCTGGTTTACACACTGGTTTGGGCTTTCTGTATTTTTACCTCGCATGCCATGAATCCTCCTTCCATTCCATGCCCATGTTGAGGAACACAAACCGATGCTTTTCCTTTTGCACCATCCTGCTTTCAGTGGAACTCAACAAGGAAGGTACAACATTTCCTTAATGAAACCCAAAATGAGAAACACTTCTATTTTTGCCAGCTGATTTTTAATAATGATGTCAGCATTTTGTAATCATTGAGTTTAGTTTATTTTTGACAAGTTATCAGGTGAAATTGTGTGCCATTTGCTACGAAGGTTATTTTTATCTGCATTTGATAGATTGAAGGGGATGAATCTGGCACATACCCATTTCACACTGGTTATGCAAATACCTTACATTTCAATCAAAGACAAAGTGGAAAAATGTTGCACTTAATTCAACTTCAACGTACGTACAGAATTAGTGTAGGAGAAcacatgattttagtttttgaaGACTTCTGTATTTGTTAAAGTTTCCTCAAGTAAGTATACATTGGACAAGCCTGTCCACATGCATATTGGTGCTGTGTTAGGGGGTTGTTCCACCAATTTGGTGCCTTTTTGAGAAGTGTTTCTTGATTTCACCTAATTTAAACATTCTGTCATCAAGAGCACATTCATGTTCAacgttttcccatctcaagacggggaaaaaatactatagtaagtCCCAAATAAAGTAACGGTTGTtcagactgtaacagggttgttcagactgtaacagggttgGCGACATAATCTTAAATCatccataaatccccttgtgacataGGGAATAGAAGTTTGTGCAACAGGGAGTGGTAATTGAAGCCTGTATCTATGGGTAACAGAGTTGACGTGTTATGCTCGACCCACTCTGTTTTCCGATTTGACTATTAGATAAATTTATCAAAAGAAACATTGTTTTCGAAAGGAATAGTTTCAAAGAAACAATGATGGGGAAACTGTAAAGACATTTTAGGGTTAAATAGGGTCAAATCTTCCTAGAGgattttggcactttagcaagtatttattctataaaaaaaatctgacttattgaattctccatgtttATATTAAATGGCACTTTGAATATAACATGCTTTTCAAATTCagtattggtgcacaatttctactttaTATCAGAGGGATGCAAAAAGCACTTCGTGGAACAACCCTAGGACATTTTAGGAAAGGCcaaaaattaatttaaaaaaaaaaaatgttttgcctaTATCAAACCGTGGCTAGAAAGAGATCAACTTATACTTCTGGAGTgtatttgtttttcttttcatcCTTAAACTCTTTACAAAATCTCTATGGAAACATTCTTGCTAAATGCATTCCTGTTTTTGTTTAAACCATGGTTCAAAACAACAATTTTGTATTGTCTAGAAATATGATTTGAATCATGTGGGTCTGCCTCACTTGTTTTACTATTGTTTTATTAAATTAGATGTTTTAAATGTATATCTTCtgacatgtaaaaaaaataaatagtgAATATAAATAAAA

Function

GO: NA

KEGG:

id description
K10373 TPM1; tropomyosin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206215 lncRNA upstream 120827 72887273 ~ 72935432 (+) True G181706
TU206104 lncRNA upstream 249084 72806900 ~ 72807175 (+) True G181601
TU206103 lncRNA upstream 249559 72806371 ~ 72806700 (+) True G181600
TU205523 lncRNA upstream 593047 72456880 ~ 72463212 (+) True G181040
TU205496 lncRNA upstream 614377 72433857 ~ 72441882 (+) True G181013
TU206350 lncRNA downstream 24355 73093953 ~ 73095214 (+) True G181833
TU206360 lncRNA downstream 41903 73111501 ~ 73157853 (+) True G181841
TU206373 lncRNA downstream 62561 73132159 ~ 73132598 (+) True G181854
TU206378 lncRNA downstream 67189 73136787 ~ 73407337 (+) True G181859
TU206407 lncRNA downstream 123749 73193347 ~ 73194365 (+) True G181887
XM_036954987.1 mRNA upstream 26034 72888317 ~ 73030225 (+) False tln2b
XM_036954991.1 mRNA upstream 26034 72888317 ~ 73030225 (+) True tln2b
XM_021570969.2 mRNA upstream 712903 72336802 ~ 72343356 (+) True LOC110495632
XM_021618405.2 mRNA upstream 802450 72250884 ~ 72253809 (+) False LOC110533853
XR_002469455.2 mRNA upstream 991060 72059856 ~ 72065199 (+) False LOC110495604
XM_021571075.2 mRNA downstream 2819 73072417 ~ 73075269 (+) False lactb
XM_021571084.2 mRNA downstream 2820 73072418 ~ 73075269 (+) True lactb
XM_021571117.2 mRNA downstream 14691 73084289 ~ 73146123 (+) False tmem266
XM_036955069.1 mRNA downstream 15406 73085004 ~ 73146123 (+) True tmem266
XM_036955095.1 mRNA downstream 94161 73163759 ~ 73169203 (+) False isl2a
TU205289 other upstream 802532 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 991064 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 991064 72059717 ~ 72065195 (+) True LOC110495604
TU203144 other upstream 2248355 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 2942819 70107286 ~ 70113440 (+) False G177812
TU206530 other downstream 271782 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 272109 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 507167 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 537294 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 552938 73622536 ~ 73624518 (+) True G182144

Expression Profile