RNA id: XM_021571075.2


Basic Information

Item Value
RNA id XM_021571075.2
length 2187
RNA type mRNA
GC content 0.47
exon number 6
gene id lactb
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73072417 ~ 73075269 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttaacccactgttccccggtaggccgtcaatgttaataagaatttgatcttaactgacttgcctagttaaataaaggttaataatgTTTtaagcaaagttcaagggggttgtactacagtatagtaGCGGTAATGCAACATCTAGTGGATGCCAAACGCCGTTAAACCTCATCGAATAAGAAAAATAAGCGTTTGAAATTGATCTGAGCTCCCAATTCGTCATTTGGCTAGTACTGTCTGGATCGGGGATTGATTGATTTTGTCTGACGCAAGCAGGGGACTCAGGAAATGTTTCAAACTCGATTCGATTGTAGCGATTTTCTACAGTAAAACAAACGTCAGTCGGTCGATAGGCTACAGAAAAGTAAATATGTCGCGGTTATTTTACTCGCCATTCAAGCGTTTTTGTGTCAAGTGTAAAGATTTTCCTGCAGTGACCGCGCGTTGTTATTCCTCTTTGTTGACTCCAATTCGGTGCCCCCAGCTGTCAAAACAACAGACCTTTGTCGTGTTACAACAGCAGCAGAGAAAATGTTTCGGACCTTCACGCCTAACTTCTCGGTTTTACTCAAGGTCAAAGTTTTGGATTGGGGGAATAGGTGCGGGCATTGTTTTAGCTTTGGGATTGAAATATCACACTGACATAGCTGAGCTCTCATGTGAAGAGGACTTCCAACATACTGGAAGATATGGTGCTGCCATTCAAGTTAGCAGAGACCTTGTTCAGCGGATAAAGGTACAGGATGAGGTTGGGGCTCCAGGGCTGGTGGTCGGTGTGTCTGTGGATGGCTCTCAAGTCTGGTGCGAAGGACTTGGCTATGCTGACTTAGAGAACCGTGTGCCCTGTGGACCAAAGACAGTGCTGAGGATCGCCAGCATCAGTAAACCCCTAACTACAGCAGCAGCAGCCCGCCTGTGGGAGGAGGGGAAGCTTGACCTCGATGCCCCTGTCCAGAAATACGTCCCTGAGTTCCCCCAAAAACAGTTTGAGGGAGAAGAAGTGATAATAACTCCACGGTTGATTCTCTCTCATCTGAGTGGCATACGGCACTACGAGAAGGATGCCAAGAAagtgagggaggacagggagaaggCCAAACGACATTTAAAACTGCCTGGTAAAGAGGAAAAGAGCTTGTCTGAAAACAAACCCAAGACCGAGGACAGCAGCACCAAGAGCAAGGAAAACAAACCGGCTCAGAAGAAAAAAGAGTTTGAGCAAGAAGAGTACTACCTGAAAGACCGCTTTGAAAGTGTCATTCATGCCTTGGACCTGTTCAAAGACGACACTCTCGTTTTCAAACCTGGCACCACCTTCCTGTACTCAACCCACGCCTTCACCCTCCTCAGTGCCGTGGTGGAGAGAGCTGCTGGCCAGCACTTCCTGGATCACATGATGAAGATGTTCAGGGAACTGGGCATGCTCAACACTGTGCCAGATGAGAATGACCCCATTATCTATAACCGCTCAAGgtttTATCATTTCAATAAGAAAGGACGCATAGTAAACTGCCCTTACGTGGATAACTCCTATAAATGGGCAGGAGGTGGCTTTCTCTCCACTGTGGGAGACCTGCTCCTGTTTGGGAATGCTCTGCTCTTCAGCTACCAAGTGGCCAACCTGAAGGACTGCACAGACCTCCTGCCTGGCTTCCTCAAACCAGAGACAGCCCAGGCTCTGTGGGCCCCTGTGGACAAGACAGAGACCTCCTGGGATAAGGATGGGCTGTATGCACAGGGCTGGCTGGTGGTGGAGAAGGAGCAGAAGTATGGCCAGTGCAGGAGGCGCAGGCATTATGTCTCTCACACAGGGGGCGCCGTGGGGGCCAGCAGTGTCCTGCTGGTTTTGCCCAGTAAGACAGTCCAGCATCCCGAAGGACAGACTACAGCCCTACCTCAGGGAATAGTGGTGACCATCATCACTAACATGCAGTCTGTGGGACTCAACAGCACAGCACTGAAAATCGCCCACGAGTTTGACAAAGCTAGAGGCTAATAAGAGTTTATATTCTTTACAAATATAGAAGGATAAAACTACCGCAAAGTGTCAAGGCACTACAATATCTTTACTAATGGCAGTGGATGAATGATTTATCAGCAGCACTCTTTTGTATATTTGAATTTGATACTGCTTTTATACATTTCAGCCCATTTTGTTGAGTAATAAAAGACAATGTTTGACATGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206215 lncRNA upstream 136985 72887273 ~ 72935432 (+) True G181706
TU206104 lncRNA upstream 265242 72806900 ~ 72807175 (+) True G181601
TU206103 lncRNA upstream 265717 72806371 ~ 72806700 (+) True G181600
TU205523 lncRNA upstream 609205 72456880 ~ 72463212 (+) True G181040
TU205496 lncRNA upstream 630535 72433857 ~ 72441882 (+) True G181013
TU206350 lncRNA downstream 18684 73093953 ~ 73095214 (+) True G181833
TU206360 lncRNA downstream 36232 73111501 ~ 73157853 (+) True G181841
TU206373 lncRNA downstream 56890 73132159 ~ 73132598 (+) True G181854
TU206378 lncRNA downstream 61518 73136787 ~ 73407337 (+) True G181859
TU206407 lncRNA downstream 118078 73193347 ~ 73194365 (+) True G181887
XM_021571037.2 mRNA upstream 2819 73056128 ~ 73069598 (+) False LOC110495666
XM_021571063.2 mRNA upstream 2819 73056259 ~ 73069598 (+) True LOC110495666
XM_021571018.2 mRNA upstream 6390 73056128 ~ 73066027 (+) False LOC110495666
XM_021571046.2 mRNA upstream 6390 73056259 ~ 73066027 (+) False LOC110495666
XM_021571054.2 mRNA upstream 7781 73056259 ~ 73064636 (+) False LOC110495666
XM_021571117.2 mRNA downstream 9020 73084289 ~ 73146123 (+) False tmem266
XM_036955069.1 mRNA downstream 9735 73085004 ~ 73146123 (+) True tmem266
XM_036955095.1 mRNA downstream 88490 73163759 ~ 73169203 (+) False isl2a
XM_036955085.1 mRNA downstream 88592 73163861 ~ 73169203 (+) False isl2a
XM_036955099.1 mRNA downstream 89077 73164346 ~ 73169203 (+) True isl2a
TU205289 other upstream 818690 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1007222 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 1007222 72059717 ~ 72065195 (+) True LOC110495604
TU203144 other upstream 2264513 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 2958977 70107286 ~ 70113440 (+) False G177812
TU206530 other downstream 266111 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 266438 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 501496 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 531623 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 547267 73622536 ~ 73624518 (+) True G182144

Expression Profile