RNA id: XM_021571097.2


Basic Information

Item Value
RNA id XM_021571097.2
length 1368
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC110495704
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73076020 ~ 73078379 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCAGAGTTATTTTCAACAGTCTGTCTCTGTGATTCACCTAAGAAACCTGCACTAACCTTACCACAAACTGGGATTTCCTGAGGTGGTGGGGATCTTAGAGAACCCTGTCACATTCTTCAGGATAGAAACAAGGAAAATAAACATTCAAATGATGGCAGACCATGGTGACCCATGCAACGAGTTAGAGGTTTCGTACTGCATGAATGGAGGAAAATGCTTTAAAATTTCATTTATGGATACGCTTACTTGTCTCTGCAGTGAGAACTACAAAGGCAGTCGTTGTGAGCAGTACCAGCTGTTCACCACTGCACATGATGCAGGGGAGACAGGACTGGTTGCTGCTGTGGTCATCATTGTCCTTTTTATTCTAGTCGTGTTGGTAGTAGTAATCTACTACACCTGCAAGCTATGGAAGGACAAACCAAATAACCAGCAGAAAAGCAGTGAACAACAGTATTGGAGAGTAGAGCCCAGAGTATGAGGCCTGTTGTATATTGTTTTGGGGACATCGGATTGGATAACAAAATGTTTCATGGACGTTGGTACGATATGGTGTGGGTCTGGATGCTGCTGGAGATGTGGCTATGAAGGaccaggaggacagaggagacttATACCCACAAACATTCTGCAGCAAGCGTCAAACGTCAAGCTGCAGCCAGTTTGAGTGGCCATCAGAAGCTGAAGCTACTgtagacacaaagacagtcagCCACAACACTTTTTCTCCATACTGTGTGACTGGGTGTAGGACTGACTACAACCTATTACAATGGCTGCCTTtaggcagcccaattctaatCGTTTTTCACTaactggtcttttgaccaataagAGATCTGAAAAAGATCTGTGAAAAAATCTCATTGTGATTGGACAAAAGACCAACTAGtggaaaaaaaaatcagaatttgGTTgcatgtgtaaacgcagccaatgTGTTTCATTCCAATGTCTATTTTCCACTGACACACAATACATGCTTTTGAAGCTGGTGGATGGAATGGCATGGAGTGAAACCTGATGCCTTCACTCAAAGGAATACTATGACTGTAAAATGTTTGCTTAGTCTATGCTTTGATTGACAGAAGTCAGTGAGTGTGTCGAAGTTCAATTGTGAATGTGCACTTTCTCTAAGCCTGTGATACCATAGATTAGAGTATATTGGGGCAATACGTTGAATACTTCATGTAGAATTCACATGCTTTTCCCAATGTATCAATAATGCATCTATTTGTTCAACTTTCATACAAGTCAAACATGAAGTGAGCATTAGTTACAGTAAGCATCTTTCTTGTATTATTGAATGTTCATGTGTAATATCACAAATCACAATAATAAATCGTACATTTCTTGTGATTGCGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207072 lncRNA downstream 9296 73014795 ~ 73066724 (-) False G182494
TU207056 lncRNA downstream 9296 73027384 ~ 73066724 (-) False G182494
TU207062 lncRNA downstream 9296 73055809 ~ 73066724 (-) False G182494
TU207063 lncRNA downstream 9296 73055809 ~ 73066724 (-) False G182494
TU207068 lncRNA downstream 9296 73056242 ~ 73066724 (-) False G182494
TU207135 lncRNA upstream 28936 73107045 ~ 73113341 (-) True G182552
TU207137 lncRNA upstream 29024 73107133 ~ 73113445 (-) True G182554
TU207136 lncRNA upstream 29366 73107475 ~ 73113880 (-) True G182553
TU207237 lncRNA upstream 155093 73233202 ~ 73265698 (-) True G182648
TU207334 lncRNA upstream 330657 73408766 ~ 73410961 (-) True G182734
XM_036954980.1 mRNA downstream 198347 72871971 ~ 72877673 (-) False c2cd4a
XM_021570993.2 mRNA downstream 202249 72871971 ~ 72873771 (-) False c2cd4a
XR_005034538.1 mRNA downstream 300371 72774064 ~ 72775649 (-) True LOC118937294
XM_036954955.1 mRNA downstream 331508 72456866 ~ 72744512 (-) True roraa
XM_036954961.1 mRNA downstream 543199 72456866 ~ 72532821 (-) False roraa
XM_021571138.2 mRNA upstream 68112 73146221 ~ 73157311 (-) True etfa
XM_021571186.2 mRNA upstream 98612 73176721 ~ 73272412 (-) False scaper
XM_021571203.2 mRNA upstream 98612 73176721 ~ 73272412 (-) False scaper
XM_021571170.2 mRNA upstream 98612 73176721 ~ 73292819 (-) False scaper
XM_021571178.2 mRNA upstream 98612 73176721 ~ 73292819 (-) False scaper
TU207073 other downstream 9296 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 14707 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 202275 72872744 ~ 72873745 (-) True c2cd4a
TU205184 other downstream 964357 72110968 ~ 72111663 (-) True G180716
TU204130 other downstream 1601041 71474372 ~ 71474979 (-) True G179754
TU207306 other upstream 266841 73344950 ~ 73345847 (-) True G182708
TU207489 other upstream 598103 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 914969 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 1028774 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1652763 74730872 ~ 74732637 (-) True G184006

Expression Profile