RNA id: XM_021571138.2



Basic Information


Item Value
RNA id XM_021571138.2
length 1429
RNA type mRNA
GC content 0.47
exon number 12
gene id etfa
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73146221 ~ 73157311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AACGGAAGTGATTTTAGTCCATCCCACAGTTTTGTCTCGCGAGAACATTCTACAGCTGTCAGAGTTCGTTCGAAGTAAAGTAAAGTAGCATTTGGCAACATCGAATAGCAGGGTCCAAGATGCTTAGAGCTGTCAACAAAACACATTTCAAACAGTTGTCTGGTCTCCTCCAGAGGTTTCAAAGCACCTTGGTGGTGGCAGAACACAACAATGACAAGCTGACTCCCATTACGCTGAATGCTATCACTGCAGCCAAGAAACTGGGAGGAGATGTGTCCTGTTTGGTTGCTGGAACAGACTGTACAAAGGTTGCACAGGAAATCAGCAAAGTCCTGGGTGTGAAGACAGTTTTGATTGCTCAAAATGATGCTTACAAAGGATCTCTGCCAGAAGCGTTGACTCCACTTATCCTGGCAACCCAGAAGCAGTTCAACTTCACCCATATTTGTGCTGGAGCATCTGCCTTTGGGAAAAACCTGCTGCCCAGACTGGCTGCCAAGTTGGATGTTGCTCCTATTTCAGACATCATCGAGATCAAATCCCCTGACACCTTTGTCAGAACCATCTATGCTGGAAATGCTCTCAGCACTGTCAAGTCTAATGACAATGTCAAGGTTTTCACTGTCAGAGGGACCTCCTTTGAGCCCGCTGAGGTGGAGGGAGGCAGTGCTACATCAGAGGAAGTTGCTGCGTCCACTCCTGATGGGATGTCCGAGTGGCTGGAAGCGTCCTTGACCAAGAGTGACCGTCCAGAGCTGACCAGTGCAAAGGTTGTGGTGTCCGGAGGAAGGGGCCTGAAGAGTGGAGACAACTTCAAGCTGCTGTATGACCTTGCTGACCAAATGAATGCCGCAGTTGGTGCTTCCAGAGCTGCTGTGGATGCTGGATATGTCCCCAATGACATGCAGGTTGGACAGACTGGCAAGATCGTGGCCCCCGAGTTGTACATCGCTGTTGGCATCTCTGGAGCTATTCAGCATCTGGCTGGGATGAAGGACAGCAAGACTATTGTGGCCATCAACAAGGACCCAGAGGCTCCCATCTTCCAGGTGGCTGACTATGGTCTGGTGGCTGATCTGTTCAAGGCTGTCCCTGAGATGACTGCAGCATTGAACAAGTGAGCCAAAATTCAGCTCAGCAGCCATACCTTCACTACCTGGGTACCAAGACCACATGGTTACAGCTCTCCTACAATCTCTGCCTTAACATTTCTGGAGCTACTTTTCTGGGAACACTAATAATGTTATCATCCTCCTTCCTAAATGGAAACAGAACAACACTGTTTATAAACCGGACATCTGTTTTTATGGACCTAGCTATGATAATGCCACAAATAATGTTTGTGATATTTTTGTTCCCTGTTAATGCATATTTTGTAATATGTATTTAACGTAGCGTCACAATAAAGGCAATCTTCAGGAAGTCTAAA

Function


GO:

id name namespace
GO:0009887 animal organ morphogenesis biological_process
GO:0070584 mitochondrion morphogenesis biological_process
GO:0031998 regulation of fatty acid beta-oxidation biological_process
GO:0009055 electron transfer activity molecular_function
GO:0050660 flavin adenine dinucleotide binding molecular_function

KEGG:

id description
K03522 fixB, etfA; electron transfer flavoprotein alpha subunit

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207136 lncRNA downstream 32341 73107475 ~ 73113880 (-) True G182553
TU207137 lncRNA downstream 32776 73107133 ~ 73113445 (-) True G182554
TU207135 lncRNA downstream 32880 73107045 ~ 73113341 (-) True G182552
TU207085 lncRNA downstream 56743 73002096 ~ 73089478 (-) True G182506
TU207072 lncRNA downstream 79497 73014795 ~ 73066724 (-) False G182494
TU207237 lncRNA upstream 75891 73233202 ~ 73265698 (-) True G182648
TU207334 lncRNA upstream 251455 73408766 ~ 73410961 (-) True G182734
TU207423 lncRNA upstream 404604 73561915 ~ 73562219 (-) True G182820
TU207424 lncRNA upstream 405621 73562932 ~ 73563178 (-) True G182821
TU207427 lncRNA upstream 407971 73565282 ~ 73565492 (-) True G182824
XM_021571097.2 mRNA downstream 68112 73076020 ~ 73078109 (-) False LOC110495704
XM_021571107.2 mRNA downstream 68131 73076020 ~ 73078090 (-) False LOC110495704
XM_021571110.2 mRNA downstream 68138 73076020 ~ 73078083 (-) False LOC110495704
XM_036954980.1 mRNA downstream 268548 72871971 ~ 72877673 (-) False c2cd4a
XM_021570993.2 mRNA downstream 272450 72871971 ~ 72873771 (-) False c2cd4a
XM_021571186.2 mRNA upstream 19410 73176721 ~ 73272412 (-) False scaper
XM_021571203.2 mRNA upstream 19410 73176721 ~ 73272412 (-) False scaper
XM_021571170.2 mRNA upstream 19410 73176721 ~ 73292819 (-) False scaper
XM_021571178.2 mRNA upstream 19410 73176721 ~ 73292819 (-) False scaper
XM_021571194.2 mRNA upstream 19410 73176721 ~ 73292819 (-) True scaper
TU207075 other downstream 67842 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 79497 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 84908 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 272476 72872744 ~ 72873745 (-) True c2cd4a
TU205184 other downstream 1034558 72110968 ~ 72111663 (-) True G180716
TU207306 other upstream 187639 73344950 ~ 73345847 (-) True G182708
TU207489 other upstream 518901 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 835767 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 949572 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1573561 74730872 ~ 74732637 (-) True G184006

Expression Profile