RNA id: XM_036955099.1


Basic Information

Item Value
RNA id XM_036955099.1
length 2465
RNA type mRNA
GC content 0.45
exon number 5
gene id isl2a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73163759 ~ 73169203 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGACCAGTACATCCTGCGGGTCGCCCCGGACCTGGAGTGGCATGCTGCGTGTCTGAAGTGCGCGGAATGCAGTCAGTACCTGGATGAGACGTGCACTTGCTTCGTCCGAGATGGCAAGACATACTGCAAAAGAGATTATATTATTTGGGATTAAATGTGCAAACTGTAACATTGGCTTCTGCAGCAGCGATCTAGTGATGAGAGCTCGTGACAACGTGTACCACATGGAGTGTTTTAGGTGCTCCGTGTGCAGCAGGCATCTCCTGCCGGGGGATGAGTTCTCTCTGCGGGACGAGGAGCTGCTGTGTCGAGCTGATCATGGTTTACTGATGGAACAGGCCTCAGCGGGAAGTCCCCTCAGTCCGGGAATGATTCACTCCAGGTCTCTTCATATTGCAGATCCTGTGTCTGTTCGACAGCCTCCTCATCGGAACCACGTCCACAAGCAGTCTGAGAAGACCACTCGGGTGCGAACAGTATTAAACGAGAAGCAGCTTCATACCCTTCGGACCTGTTACAATGCCAACCCAAGACCAGACGCACTTATGAAAGAACAATTGGTTGAGATGACCGGTCTTAGCCCAAGGGTCATCAGAGTTTGGTTCCAGAACAAACGTTGTAAAGACAAGAAGAGATCGATATTCATGAAGCAACTTCAACAACAGCATCACAGCGATAAAACGAATCTTCAGGGACTGACGGGTACGCCTCTGGTGGCAGGCAGTCCAATTCGACACGACAACACGGTCCAAGGGAACCCAGTAGAGGTGCAGACTTACCAGCCCCCATGGAAGGCCCTGAGCGAGTTCGCCTTGCAGAGTGATCTGGACCAGCCCGCCTTCCAGCAGTTGGTGTCTTTTTCTGAATCGGGCTCCATGGGTAACTCCTCCGGCAGTGATGTGACCTCCCTGTCGTCGCAGTTGCCGGACACACCGAACAGCATGGTAGCGAGTCCGGTGGACACGTGAGACCAGCCCAACAGGTCGCTTCGAACCCCAGCATGCTCCCGCGTGTCCTGCATGAGAACTGGCCAGCTCACAGCATGGATAGGAAAATGATTTTTTATCTTACCTACAATGTCGTTGGAATTGTCTACGAGGATACCATTTTTTTTCACGGATGGACCTGTCCACAGCATTGTTCAGGATCAGATGAATTTCAAGGTACCAGTGTGCGAACCAAGGCCTATAACTAGCCTTGCAGCCTTGAGCCTCGGATCCTACATGGTTGGACATACGTGAGGATTATATCTACACTTTATTATGAGCCGCTAACTTATAATGAACATATCAGAACGTTATCCATAGTGGCCAACACGGTCATCATTGTAGTTTCATCTAAATTTCCTATGCTGGGTTGGGATCATATGGAGCCCCATGTCTGTATAGAAGTGCATGATTTCTAGAGATTATGAATATCAAGTCTTGTAAAATATTGTAATTAAGTGGATGAGAGAAATTGTTTGAGCCGTTTAAGAAAAAGTAAGTTATTATTTATTGTGAGGAAAGACAGGTAATCTTAATAAACCCATATTAATTGTTTCATGTTTAATGAACTGCATGCGAAATCTCTGCAGTAATTCATTAAAATATTGACCGAAATTTCAATTGACAAAATAAATCACTTTATGTATTTATGAAACGGCTATTTCAGCACTTTATGGTAGGTTTAGGCCTAATTTAAATTGTCACTTTTAGGATGAAAAACGTCTGAGATTTATAATAGGCCAATATAATCTCAAATTAATTTCGAAACACTCAAAATAAATGATTTGATGTCAGTTTAGAGGACACTATTTCCGAAAATGGCTAGGGTTGTTAGACCAAACCAATTTGTAGGCTTGTCAATTTAATTGTATTGGCTATTCAAAATGGATAAAGGAGCAGCCTCATAGCGGGTCAAATTCAAGCATTTGCGGCCTGTTAATCACTACCGAGGACAAATTGTTCATTGAATGGGCCTCCACATATGGATTTGCGATGTGATCATTCCAGTTTCACTTGTAAAGTCACAAGTCTAGACAGAAGACAGGGCCAGGCGGCTCTTTATCTATGCTTGGCATCACCTGCAAACGATACATTGAACGGAACCACAACAAACCCACTTCTCTGTCGCTGGAGTCAGTGCTAAAGGGGACTCTCACCCTGATAACGCTTTCTGGAGTGTCTTGGGTTTATTTTCATTTCAGCCGGAATCCCGGATAGGAATAGCCTCTGGACATGGGGTACGTCAAGCTTGCCTACGACTGACATATTGCCAACTAGACATCAACAATGTATTGTCGAGGATGAACTTTCTGAACAGAGGATGCAATAGCAGTCTAATCTATTTATCACGACATGAAACAGCAATTGACGTCTGGCATCAAATCAAAAAGCCATTAGGTCTATACTCTATCTTGCTATGTCAATTATGTCAATAATTGCTATGCATCCAGTAGCCTACTGACCAATAAATCCAGGTTT

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048665 neuron fate specification biological_process
GO:0048675 axon extension biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206360 lncRNA upstream 6493 73111501 ~ 73157853 (+) True G181841
TU206373 lncRNA upstream 31748 73132159 ~ 73132598 (+) True G181854
TU206350 lncRNA upstream 69132 73093953 ~ 73095214 (+) True G181833
TU206215 lncRNA upstream 228914 72887273 ~ 72935432 (+) True G181706
TU206104 lncRNA upstream 357171 72806900 ~ 72807175 (+) True G181601
TU206407 lncRNA downstream 24144 73193347 ~ 73194365 (+) True G181887
TU206453 lncRNA downstream 75692 73244895 ~ 73273032 (+) False G181930
TU206451 lncRNA downstream 76321 73245524 ~ 73273032 (+) True G181930
TU206473 lncRNA downstream 99824 73269027 ~ 73296683 (+) True G181948
TU206523 lncRNA downstream 158259 73327462 ~ 73328861 (+) True G181989
XM_021571117.2 mRNA upstream 18223 73084289 ~ 73146123 (+) False tmem266
XM_036955069.1 mRNA upstream 18223 73085004 ~ 73146123 (+) True tmem266
XM_021571075.2 mRNA upstream 89077 73072417 ~ 73075269 (+) False lactb
XM_021571084.2 mRNA upstream 89077 73072418 ~ 73075269 (+) True lactb
XM_021571063.2 mRNA upstream 94748 73056259 ~ 73069598 (+) True LOC110495666
XM_021571221.2 mRNA downstream 130377 73299580 ~ 73316950 (+) False LOC110495782
XM_021571214.2 mRNA downstream 130968 73300171 ~ 73316950 (+) True LOC110495782
XM_021571245.2 mRNA downstream 182597 73351800 ~ 73361169 (+) True si:dkey-24l11.2
XM_021571258.2 mRNA downstream 192106 73361309 ~ 73362530 (+) True LOC110495809
LOC110495840 mRNA downstream 231056 73400259 ~ 73405787 (+) True LOC110495840
TU205289 other upstream 910619 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1099151 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 1099151 72059717 ~ 72065195 (+) True LOC110495604
TU203144 other upstream 2356442 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 3050906 70107286 ~ 70113440 (+) False G177812
TU206530 other downstream 172177 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 172504 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 407562 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 437689 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 453333 73622536 ~ 73624518 (+) True G182144

Expression Profile