RNA id: XM_021571214.2


Basic Information

Item Value
RNA id XM_021571214.2
length 3530
RNA type mRNA
GC content 0.44
exon number 16
gene id LOC110495782
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73299580 ~ 73316950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACTAGTGAACCAAGCCCTGTGTTCCAGCTGGGGGTTTCCTGTGTGTACATCTTCACTGGCTTTGACAACCATCAGTGCTTTCTTTACTGAATTCACTCGCAGAGTATATTATATTTGGTCTATTGCTGAGATGACTTTACAATTCAAAGATGTATTTTGGGGAGTGGATTTCATCAGTAATGTGGGATATGAGGCTCTCATCCAGAGACTCTGTGAGGGTCGACGGATGTGCAAAGATATGGAGGAGCTCTTGAAGATGAGGGCATCTGCTGAAGAGAGATATGGCAAAGAGTTGGTGATGATTGCACGCAAGGCAGGGGGACTCTGTGAGATCAACACTTTGAAAGCATCCCTTGACCAACTCAAAGTCCAAATTGAGAACATTGGGAACCTACACATACAACTGTCTGGGGTGTTAAAGGAAGAGGTCAAGAGGATGGAACAGTTCAGGGAGCGACAGAAAGAGCAGAGAAAAAAGTTTGAAGGCATCATGGACAAGGTTCAGAAGATAAAGGTGTCTTTATACAAGAAAACAATGGAGTCTAAGAGAACTTATGACCAGAGGTGCAGAGAAGCGGATGAGGCCGAGCAAGTTGCTGAGAGGATGATCAGTGTAGCTACCACCACACCCAAGCAGGCTGAGAGGGTGCACAACAAGTCTAAGCAGTGCAGGGAGGCAGCAGCAGAGGCAGAAAAACAATACATGTCAAATATTGATCAGCTAGACAAGATTCGTCAAGAATGGGAAACTACACACGAGAGTACTTGTGAGGTCTTTCAGCAGCAGGAGGGAGATCGTATCAACATCCTGAGGAATGCCATCTGGGTCCACTCTAACCAATTCTCAATGCAATGTGTCAAAGATGATGAGTGTTATGAAGAAGTGAGGAAAACTCTAGAACTGTGTGACATCACGGCAGACAATGACTGCTTTGTTGAGATGAAAAGCACTGGCTCAAGTCCACCAGCTCCCATTGTGTTTGAGAACTATTATGAGAGAGAGCCCTCGACAGACAGCAATGGCAGTGCCTGCTTTGTAGGAGGAGTTATGAAGAGGTTTTCAAACCTTCTGCAAGGGAACTCATCGACTGGCTCTAAAACAAACGTCAATGACAGTTCACAGCCACTAGCACCACCTACTGCCAACACATCAGATGGAGTGTACGCCTCCATTCCTGGATTTCAGCAAGTGCAGCCAACCatctcagaaagcagagaggagtACCAGGCTCTGTATGACTATGCTGCTCAGGGTGAGGACGAGCTGTCCATGTTTGCAGGGGAGACGGTTGTGGTCATTGAACAAGATATGGATGGCTGGTGGACTGTGGAGAGAAACGGCATTTCAGGACTGGTCCCTGGGTCCTATCTGGCCAAAGAATGAACTATCCTTGGCACAAGTAaggacctgagccctaggaccatgcctcaggactacctggcctgatgactccttgctgtccccagtccaccctgtcatgctgctgctccagtttcaactgttctgcctgcggctatgggacCCAGACCTGTTCACTGCACGGGCTACCTTgttccggacctgctgttttggactctctctctactgcacctgctgtctctaactctgaatgatcggctatgaaaagccaactgacatttactcctgaggtgctgacctgttgcactctcggcaaccactgtgattattattatctgactctgctggtcatctatgaacatcttggccatgttctgttataatctccacctggcacagccagaagaggagtggccacccctcagagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttactagccatcgtgcttctacatctgcgttgcttgctgtttggggttttaggctgggtttctgtacagcactttgtggcattggctgatgtaaaaagggctttctaaatacatttgattgattgaatgttCTTACAACATTCCCATGAAGCATGTCTAGAACATATCTTaaattctgagaacatggtaaccacaTTCTGGGTAAGTTCACATACgggaacattcctatgaaaacaTTAGTTAATGGTCTGCTGAGACTCTTAAGGGAATGTTCtccaaagttgtgggaacgtTTTTTGTTAGCTGGGCTGTTACATTAAATTAAGTGCCCCTCTGGCGGTGAGGTCGCCAATGTGATAAGGGAGTATAAGCCAATTTGGTTTCAACAGTATGTTGTTATTTCCTTTGAGATTTTGTCTTTGAAATTTGTATTAAGAATAATGGTAGTAGTAATAATTTGTCATACAGTAAATAGTTTGTCCTCTCTCGGGGTTATGGCGAATGTGACCATAGATGGTTTCTAGATGCATGGAAGGGTTAATTCGACCGAGAACAGTGTGAGCCTCACCCCCTCTAACCTGCTGAATTAATGGCGACAATGGCATTAACTATGGCCCTGTCCTTCACCACTTCTACCTGAGTCCGAGCCAGCAACCTGTACACAGCATCTAGTCGAAGCTATCAACTGCCTTTTCTCTCAGGAGGGCAGCATGAGTCCACGTGGAGTGTGTATGGAGAGATCCCGTCCAAACTTCTCTCCTGCTGCTGGTGTACTAGTTGGAAAATGGACAAGACTTAATGCACCGTAAAGGATAGTGGTGGCGGCTAAAGGTGAGAGATTTGTCTGCTTGGGAAAAATCTGATTATTCCCAGATATTGGAATCGGGACATTATCAagggccatccactttgaacatGTGCCATTGAGAAGACAAACTGGAACACTATTTGAAGAAGAAAATGAAGAAACACCAGAAGAATGAGTGCCGGGAAGGATGGGGGTGGTCAAGTGTGCCTGTAATTGATTTATGCTTGTCCAAAAAGTTTTATTTGGGGTAACAGGTTGATTCTGGAGGTCTGCACACTGCAAAATGTATAGTAATTTATACAAaaaatgcattgagatactgacTTGTCATTAACACAGGGACAAATGGGGGCCGTGATGAGAAAATGTAATGCTAGAAATATAAGATGAATATAATGTATGTCAATGTTAGTAGTACATGCTGTATATTTATTTCCCTGTCTGTAAATGTACATTCTGCCAGTGTGTACTAAGTTGAGGGTCTTAAATTCAAGTGATAGACTCAACGCGACGCAGTAGGGACTGTTATTTTAAATTTGGTTTGGATAATTTATCAATAGTTCTAGTCACTCTCTTAGGAACATGAAGGAAGAAGACAAAGTCAAAAATCCAGAATCCATAAATGAAATTGTGTAATCAAGCATATGTAACTGTATGAAATGAAGGTCTTAAGTTAAAACATTCTACTGCAATGGTTTTACAAGTAAGGGGTATGGAATAAGGATCAGTTACTAGTTGTAGTGTACAACTCAGAATGAAGGGTTTGAAAGTGTCTGTGGTTTTTCTGCGTTAATTTTGTTTACTTATAATGATGTATTTTGATAGTTTAAGCAATAACCAAATGaataaaatgtaataataattatCACAGAGTGATAAGA

Function

GO: NA

KEGG:

id description
K12804 PSTPIP1; proline-serine-threonine phosphatase interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206473 lncRNA upstream 3488 73269027 ~ 73296683 (+) True G181948
TU206453 lncRNA upstream 27139 73244895 ~ 73273032 (+) False G181930
TU206451 lncRNA upstream 27139 73245524 ~ 73273032 (+) True G181930
TU206407 lncRNA upstream 105806 73193347 ~ 73194365 (+) True G181887
TU206360 lncRNA upstream 142318 73111501 ~ 73157853 (+) True G181841
TU206523 lncRNA downstream 10512 73327462 ~ 73328861 (+) True G181989
TU206529 lncRNA downstream 22513 73339463 ~ 73340072 (+) True G181994
TU206492 lncRNA downstream 48629 73365579 ~ 73366983 (+) True G181965
TU206558 lncRNA downstream 96712 73413662 ~ 73414721 (+) True G182020
TU206665 lncRNA downstream 256655 73573605 ~ 73573921 (+) True G182124
XM_036955095.1 mRNA upstream 130968 73163759 ~ 73169203 (+) False isl2a
XM_036955085.1 mRNA upstream 130968 73163861 ~ 73169203 (+) False isl2a
XM_036955099.1 mRNA upstream 130968 73164346 ~ 73169203 (+) True isl2a
XM_021571117.2 mRNA upstream 154048 73084289 ~ 73146123 (+) False tmem266
XM_021571245.2 mRNA downstream 34850 73351800 ~ 73361169 (+) True si:dkey-24l11.2
XM_021571258.2 mRNA downstream 44359 73361309 ~ 73362530 (+) True LOC110495809
LOC110495840 mRNA downstream 83309 73400259 ~ 73405787 (+) True LOC110495840
XM_021571345.2 mRNA downstream 92102 73409052 ~ 73418838 (+) False slc28a1
XM_036955208.1 mRNA downstream 92162 73409112 ~ 73418838 (+) False slc28a1
TU205289 other upstream 1046444 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1234976 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 1234976 72059717 ~ 72065195 (+) True LOC110495604
TU203144 other upstream 2492267 70795410 ~ 70807904 (+) True igf1ra
TU201991 other upstream 3186731 70107286 ~ 70113440 (+) False G177812
TU206530 other downstream 24430 73341380 ~ 73342277 (+) False G181995
TU206531 other downstream 24757 73341707 ~ 73342277 (+) True G181995
TU206574 other downstream 259815 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 289942 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 305586 73622536 ~ 73624518 (+) True G182144

Expression Profile