RNA id: XM_021571245.2


Basic Information

Item Value
RNA id XM_021571245.2
length 3991
RNA type mRNA
GC content 0.45
exon number 12
gene id si:dkey-24l11.2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73351800 ~ 73361169 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGGAAAAACAACGTCAGCCATTGGACTTTGGCTGCAGCTACTGTATCTACTGAATGCAACAAAGTAACATCAGCTTTACGGAAACAAACGTATAGCAAATAGCTACATGGAACGTTCACCTGTAAACAGCGTTGAGGTATCACCAGAGAGCAATGgggattctgtctctctgtgtcacaaTGAGGAAGAGAACAGGAATCAACCAGCACATGGTGGCCCTCAAGTCCAGCTGTGTCGTTTCTACTCACAGGGACGGCACTGTAACTTTGGGAGGAAGTGCCGCTTCCTCCATCAAAGAGGAGATTACACCACCCTCACCCAGGGGAAGGTAGATAACTGGACAAAGCAAAGGTCAGAACAGGAGAACCAAAGAGGGACAGGCCCTCACAGCCACCCTGGAATCACACTGCAGAATCCAGTGGTTGACAGCCATGGAGATGTAGGCCACAGGCTGCCCTCCAAACCAAGGGCTGCTCCAACCAGAGTTGAGAGGGCCAACAATCGCCGGCCCTGTCGCTATTTTCTGTCTGGGTGCTGCACCATGGAAGATAGATGTCACTACTGGCACCCACCACAGTTTCCCCTAGTTGACGACCAGCCTGTAGGAGACGGAGGCAGGCCCAGGGTGCCCCATGCCCCCCCTCCCAGTGCCCTTCAGGTGGTCAAACTGAGTGACCTGACTGACAATATCACCAAACAGCTACGGGACACTGAGATCAAGCAGCTGATAAAGCGTTTTCCTAAAGAACAGCTTATTGTGCAGGAACGGAGCGACGGCCAAGTCACCTTCTACCGAGCCACAGTACAGCCCACTGATCCAGACTGGCCTTTTGACTTGAAAGACGTTGACATAATGGTGAGCTTTCCGGAAAAGTACCCACAAGAGGTATTTACATTAGATATACCACTGGACCAGGACTTGCCATCAGTTATGGGAAGgTATGTTGAACAAGCCTCACTGGAATGGCTACAGGCTAAACATGCCACCAATCAGCTGATGGGTAAGGTGGAGCTGCTCTTCCGACCCTTCCTTCGCTGGTTGGATCGCAGCATGGAAAGACTGTTCACTGAGGGAGCCAGGCAGCTGAAAAAAGACATGGAGATAGCAAAGGCCGGAATTCAGTTTGTGCCATACCAGCAGCTCCAGGCAACCGTGTGCAAAGAGCCTGCCGCTGATGACATGCCTGACCCTGTCCTCCACACTGCAACTgatgaggagagcagaggaggagaagatgaggagTGGAAAAAACTATTGTACCCTGGctgtgatgataatgatgatgatgatggtggtgttaGTGATGAAGAGGACCAGGGGAAGGTGGAGAATATTAAGCTCAGTGAGCCCCGCAGAGGAACAGAGGTGAAGCTGCTGGGCCTGAGGCTGGGAGAGGGCACGGCGACCGTGGTCGCCACGCAGGTCACTGTGTGTCTGCAGTGCAGCAGGTGTAAGGTGACAGCAGACCTGACTCTAAATGGCAGGAACCCCTGCACGGCCCAGTGTGAGAAGTGTAACGCAGGGATCAGTGCTGCTTTCAGACCCAGCATGCTGCACCACTACAGTGACGTCCTGGGCTATCTGGACCTGGGCACTGCTGCTCCTGTGGACCTGGTCCTGCAGGACTGTGATTTGGTCATTGTCTGCCTCAACTGCTCCAAAGAGGGACCTGTGAAGAACCTTTTGTATGGCCAGAGCAAGGAGTTCAACTGTCAGCACTGTCACAGCAAACTCAGCATCCTGGTTGACAGCACACGATTCCAGTACATTCCGCCACGCAAAGAGAAAACCGGGCACAGTGACTCTTCACTGACCTATCGGCGTAACATAAGGGACCCTGCCATACAGATGGGGAAACCACTACCTGAGAAGGGATCCTGCAAACACTACAAACAGAGTCATCGCTGGCTCAGGTTCTCATGCTGTGGCCGGGCCTACCCCTGTGACGTGTGTCATGACGAGGACCAGGACCACCCCATGGAGCTGGCCACCAGGATGATCTGTGGTCACTGCTGTAAAGAGCAGCCATACAGCAATGGGAAGCCCTGTGTCAGCTGTGGAGGCATGATGACGAGAGGAGCCTACACCAGTCACTGGGAGGGAGGACTGGGCTGCAGGAGCAAAGTCAAAATGAGCAGAAATGATAAACACAAGTATGCCAACACAAACAAAACAATTTCACGGAAAGCAGCCAGCGAAAATAAATAATCAGAGACAACATGTTAACGTTATGGCAGTGGTTGATCAGGCCTGCTCTGTGTGATTCAAGAGCAACCCTTCTATCAATGCCTTATTGATTTCTAATAAATCAACTATTGTAATGTTATCCAGCTGATGTGATTGGTGAGAAGTGTTAACATTGTTTTGAGGATTGAGCCCCGGTCCTGGAGTAGCACTCAGCCTTGTTGCCCTGGTGGGAACATGCAGCAGAACACTCTCCGGCACAGTACAAGTAACCCTGGTGCTTGTGTTCATTGTAATCACAGACACTCCCATTAAGTTTCTTATCTCTGTAACAGCCTCCCCAAGTGCCTTGTAAAATCAATGCAATGCCCTACATTTACAGTAGACTCTTTAGTGTTGCCACTTTTCCAATTCTCTCACAACTTAACCCACTCATCAATTAAGGATGAGtgctatcccactgggcacaatcGTCAGTTCAACgtttagttttgatttacatttggttgagttgtcaactaatgagGATTCAATgtaaaatcaacaaaaaatgtcacagTGTAATTGGATTTaggtatttaaaaaatacaaaattccctcacgttgactttttgcaaatccgatcagttttccacgttgatctACGAGATCGGTGTTCCTAAACCGGGACAGTTGTTGCTCAATATTCGATAGTGTGACTAGAGTGACGTTGTAAACAacagggacatagacatgtcttctggccagaaagcttaaattcttgttaatctaacggcagtgtccaatttacagaagctattacaacaataaaaataccatgctattgtttgaggatcgtgcacaacaacaaaacatcatggcaactggtttgatatattcacctctgaaggtaaataatgtacttacattcagtaatcttgctctgatttgtcatcctgagggttcCAGAGATGGTGTAGTTTTGTTTGAAAAAAAggtattcaaatgtaggaactggctCCACCCCACACTGCTTCCATCTTGTGGACAACATCTAAATTACACCTAAAATCCTATccttgcttttcaaagatggaacaaaaaacatttttgaaaacacttgttttttttgtttgtattatcttttaccagatctaatgtgttatattctcctacattcatttcacatttccacaaacgtcaaagggtttcctttcaaatggtatcaataatttGCATATTCGTTCTactggcagttagatttgggcatgtcatttttggtgaaaattgaaaaaaagggtccgaaCCTTTTTAATGTCATCACATCATtatttttgttgaaatgacgtggaaacaattatgattcaaccagtttttaccCAGTGGGATGTTCTGTTTCTCAGAACTGTGTTTTGTGTCTTTTAGGTGGGCAGGCTAGACAAAATCTTGGTAGTTTGACCATGGCATCTGGATAGAATAGCTGTGACAGGTTTGCTCCCTTGACCGTAATTAAGTAGCTCCACAAACCGATTATTAGGTAAGATTACATCAGGTTATGCTAAATAATGATTAAGTAAGATTACATGCGATTGGAATCTATGACTAAATAAACTCACTAATCTTCTAAAATAATTTAAGAGCACATGGCCAATGAACAGATGGAAAATAACAGATTTCATGGACTTAACTAATGCTATTGAGAATCAAAATGATGATTGACCATTTTTATATGAATAGGTCACCATGGTTGTCTCAAATTGAAATACAAATATGTAAGAAGTGAATGTTGTGGATATTATCAATTTAATAAATTCTACTAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206529 lncRNA upstream 11728 73339463 ~ 73340072 (+) True G181994
TU206523 lncRNA upstream 22939 73327462 ~ 73328861 (+) True G181989
TU206473 lncRNA upstream 55117 73269027 ~ 73296683 (+) True G181948
TU206453 lncRNA upstream 78768 73244895 ~ 73273032 (+) False G181930
TU206451 lncRNA upstream 78768 73245524 ~ 73273032 (+) True G181930
TU206492 lncRNA downstream 4410 73365579 ~ 73366983 (+) True G181965
TU206558 lncRNA downstream 52493 73413662 ~ 73414721 (+) True G182020
TU206665 lncRNA downstream 212436 73573605 ~ 73573921 (+) True G182124
TU206576 lncRNA downstream 225935 73587104 ~ 73587665 (+) True G182037
TU206699 lncRNA downstream 274458 73635627 ~ 73636093 (+) True G182154
XM_021571221.2 mRNA upstream 34850 73299580 ~ 73316950 (+) False LOC110495782
XM_021571214.2 mRNA upstream 34850 73300171 ~ 73316950 (+) True LOC110495782
XM_036955095.1 mRNA upstream 182597 73163759 ~ 73169203 (+) False isl2a
XM_036955085.1 mRNA upstream 182597 73163861 ~ 73169203 (+) False isl2a
XM_036955099.1 mRNA upstream 182597 73164346 ~ 73169203 (+) True isl2a
XM_021571258.2 mRNA downstream 140 73361309 ~ 73362530 (+) True LOC110495809
LOC110495840 mRNA downstream 39090 73400259 ~ 73405787 (+) True LOC110495840
XM_021571345.2 mRNA downstream 47883 73409052 ~ 73418838 (+) False slc28a1
XM_036955208.1 mRNA downstream 47943 73409112 ~ 73418838 (+) False slc28a1
XM_021571335.2 mRNA downstream 47945 73409114 ~ 73418838 (+) False slc28a1
TU206530 other upstream 9523 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 9523 73341707 ~ 73342277 (+) True G181995
TU205289 other upstream 1098073 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1286605 72059717 ~ 72065195 (+) False LOC110495604
TU204900 other upstream 1286605 72059717 ~ 72065195 (+) True LOC110495604
TU206574 other downstream 215596 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 245723 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 261367 73622536 ~ 73624518 (+) True G182144
TU208054 other downstream 1168480 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1350412 74711581 ~ 74714114 (+) False LOC110496107

Expression Profile