RNA id: XM_036955180.1


Basic Information

Item Value
RNA id XM_036955180.1
length 5639
RNA type mRNA
GC content 0.44
exon number 10
gene id znf592
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73378175 ~ 73385597 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTTGTTCACAACACACTGGTCTGGTGACGAAGGGGTGGACTGCCTTTTCTCATAACAATTACTGAAGCCTATCACATTGATAGCTTCCAATAGTTCATCAATTTGTGAATGATCAATACATTTTTACTACAGACTCGCTATATAACAGGACATGTTAGCGCCCGCGGGTTTCCTAGCAAGAAATCaataagctagctagctgttttGTTGCAAAGGAAGAAGTCCACCCGAAAAGAACGAGGCCTGGGGAGAATTATGGCAGCAACACCGGTAGCTAATCGATAGATAGAGGGAGCGTCCCATAATGACACCAACTGACAACCTTGCAGAATTTTAGCAACAAACATAAACAAGAGCCAAATGGTTTTGCAAGCATTCGAACATGGGTGACATGAAGACCCCTGATTTTGATGATCTTTTGGCTGCCTTTGACATCCCCGATGCCACCAGTTTGGATGCCAAAGAGAACATCCAGGAGAGTCACGATGAGGCAGAAGGTCAGCTGAAACACACAGGGATGTGTATGGATGACAGCTTATCTGTTCACCAAGCTGTGGGTGCATCTGATGTACCTGCTGTCAGTGTTATAGTGAAGAACACAAGTCGCCAGGAGTCGTCTgatagtggtggagagagagagggcccacACTTTGGACACCCATTGCAAAATGGTTTCAGGGGGTCAGGGGCCGCCATGGAGTCTCATCAGATAGACCACAGTGGTTCTAAGTCTTTTGTGTCTGCTTTGAATGGGGGTGGCTCAAGAGGGCTCTTAGGGAAGACCCCCGTCCAGCACAAACTTGAAGGAACGCCATCCTTCTCACAGTCCTTTTCCCAGTTCAGCCCCATCTCTAGTCCAGAATCTGAAGACAGCCGAAGCAATGGAGTTGATATCCGTCCAAAACAAGAGAGACCCTACTTCCCTGCTGCCTCTATATTTATGTCTGCAGAACCCCCAATGTCAGACAATCAGAAAAAACAGCTGTCTTACAGCATGTTTGACAAGTGCCATGAAGTAGACTGTGACGTACCTGAGAACCTTCCAAGGAGCAAAGGAGAATCTATCAAAGCAGAGGATACCAGGACAGAGAAGCCTGACAGTAATGTCAGTGACCAGAAGGTAAAGGGAGATTGTCATAGTAGTGCAATGCTCCTTACAAATGATCATAACAATATTGTGTCAAGCAGTAACGTTAATATAGTGGCAGCGTCTAATATGCCCACCTCTCATCCATGTGTCAAAACTCCAACATCAAAACTATCGTCATGCCTTGAGGCATTAGTGGCTCTAAATGCCAGAAAGGATCCCAGTGAACAACCAAACTATCAAGATCTATCATTGGCTCATGATGACAACATAAAGGTTAGTCCTAAAGTGCCCATGTCACCACAAAGTCCCAGGAGTCCTCTTGAAGCTGTGAAGCGGTTAATGAAACCACCTGACAGTCCTGTAAGCATTTGCAGTAACAGCAGTGGCAAGGGATCCCCTGCACTGGCATCTGGCTCACCCCCAGCCATACCGAGGGTCAGGATAAAGACCATTAAAACCACGACTGGGCAAATCCAGCGCACTGTTACCAGTGTAGTACCTGATTCAGAAAACGAGGACGTTCACTCTGTTGAGTCCTCTCCATCCCAGAGTATGATTGTTGAGGATGCCTACCCTAGTTTGTCTCCCTATCCCTCTCATAATGTGATAAGTGATATTATTGTTGATATGCCCATCAAAAGTACACCAGTTGGTGCTCTGCCCTCAAAGGTTACTGATACTAAATTAGAGGGGAACTCCAAGAGGCCAGGACAAATGCAGTCCGCAACTATTTTTCATAATACAAGTAGTCCTGTTATGAGGTCTATGCCAGTTGCCCAGCATGGGCCTTCTACACAAAAGAGGATTTCATCAGTTCAAACAGGCAACTCTCCCAATACAAGCTTGCTTCCCAAGGCAATGCACTTAGCTAACCTGAACCTAGTCCCTCACAGTGTTGCTGCCTCAGTCGCAGCACGCTCCACCTCCCATCAACAGAGCCAACAACACACGCTTTCCTCTTCTATGGTGTGCAGCACTGTCCCATTGGTACACCAAGTGAAAAAAGCTGCCCCTAATCCACGTGCTGCCATTCCTAGCACAGCAGCAGGAACTTTAAACAGACTGTTAAATAATGCCAACCCTGTACCCACATATGTACCCAACCTAAACCCACCACCTGAGAGCAACATCAACTTGCCACCACGTGGATATTGTTGCCTGGAGTGTGGGGACTCCTTTGGGGTAGAGAGGAGTCTTGTTTATCATTATGGCAGGAGGAGTGTGCACATTGAAGTAGCCTGCACCCACTGTGCTAAGACCATGGTATTCTTCAACAAGTGTGCCCTGCTGGCACATGCACGGGAACATAAGAACAAAGGTGTGGTGATGCAGTGCACACAGCTCTCCATGAAGCCCATAGCAGAGGGACAGATGTTTGCACCCTTGATCACTGAATCCTCTGTGCATGTGGGCTCCCATGTGCCCCCATTATCCTCACCTAAAAGCCAACCAGTCATGCCCCTCTATCCAGACAAAGTCATCCGCCACAGACTCCGCTGCCTCGAGTGTAACAAGCAGCTATCGGACTACAAAGGTCTCGCAGGCCATTACCAGAGGTTGTCGGAAGAAATGGAGGGACTGATGTGTAAGGTGTGCTCAATGCTGCTACCCAACAAGTGCAGCTACCGGGCTCACCAGCGTATTCATGCCCACAAGTCCCCTTATTGCTGCCCTGAGTGTGGTGCGCTGAGTCGCTCTGTGGATATACAGAAGCATGTGAAGGAGAACTGTCTTCACTATGCACGCAAGGCTGGCTATAAGTGTCTTCATTGTGATATGGTTTTCATGTCATTTAATGTGCAGAAGAGTCACATTGAGGAGAAACACTGTGAGGTCTTCTATAAGTGCACCATCTGTCCTGTTGCTTTCAAGTCTTCTGGTGGATGTGAAATGCATTTGACAACTAAGCACAATGCCAGCAAAGTGTCCCCTCAGTTAATCTTCAAGTGTTCTTGTGAGACAGTGTTCAAGAAAAAGCAGTTATTGCTTCAGCACTTCTATCAGAATGCCAAAAAGCGTGCTACCTGTGTGTTCAAGTGCCCTGAGTGCACTTCAATCTTCACCCAAAAGCAGCCTTTAATGCAGCACTTCAAGGGGGTACATGGAGGAATCTtcaaagaggaggtggagaaaagCACAAAACCACCTGAGATGACCGCACAGCACCAAGATGTTACCTCGGGATTCCACCAGCCAAAGTCATTGAAGAGTTATCCATGCCGGCAGTGTGAGAGGTCTTTCAATTCCTCTACAAGTTTGAGAAGACACATTCGCAATGACCACGATGGAAAGAAAAATACATTTACCTGCTGGTATTGCACAGATGAGAGGACAACATTCACTACAAACATCTTGTTGAAGAACCACATCAGTTTGATGCATGGGATCAAAAATCCAGACTTCAGTCTGTTAAAATCAGCCCCTCTGGATAGCAGTAAAGCCTTGGGAGAGGTGATTTTTCTTTTAAAAGGACCTGTTTCAAAGAGACCTGCTGTTGAGtctgagggagaggggcaggaagGCGCTGCCCTAGAAGGCTCCCCCGCCAAGCGTCTGAAACATCAGTTTCGCTGCTCAAAGTGTGGCTTCACCACAGAGGATGGCACACAGTTCCAGAAGCACATACCTCAGCATAAAACTGATGAAAACACTCCCCAATGCCTGCACTGTGGATTATGTTTTGCGTCCCAGCTATCTCTCAACAGACACCTGTTTATTGTGCACAAAGTCAAAGAGCCcgaagaagagaggaaagaaaggatgGACATGGAGTACGAGTGCAGAAAGAAGCAGGAAGAGGACGTGGGGAAAGCAGTGggtgtgaatgagagagaggactTGCCACCACCATTAGTTAAATCTGACCCCCAACGGGCAGAGGATCCAACCAGGTTGCACTGTGAGCCTGCAGTAAGACTGACTGTAAATCCACATACAGCTTTCACCTAGAGTTTCATGGATAGTGTCATCAGCAGGCAAAATAAAATCAATGAGAGCAATTTTGAACTTCATAAAAGCTGCGATTTCCATTTCCTTGGGTAATAGTAGTTTAACTTCAGATGCTTGACATGCTGCACTAAAGTGGtacctttttttttatttcattttttgcCTTTAAACTAAATGCTTTTTGTGTTTCTCAAAGCCTTGGGACTGGCAGTTGTTCCAAATCAATTGGATAATTTTGGAAAAAGATtataatgaattatttactttgtTTTACCTTTTGAAGCTTGCATGTTTTGTATTGTAATTCATGTATTAAAATGCCTCTGGTACATAACCACACCCACCTGTAAAGGCACAGGGTTTGGTTCATCAGTATTCTGTAGTGACCCCAGTTATATCAGTTACGTCCCTCAGGCTTACCTCACATTTAGTTTCATATCATGATGACTTTGCTTTAGTTTATGACAGCCATATCATATGCTTGGTTTCATATTTTTGGCCTTATAAAATACATAATAATAGATGGCGCTTCAAGCAGGTCGTGGCTATACTGGTGTCATGTAACAGTATTACAACTTctatcatactgtatgttgaaatATTTACTCTTACCTAGGTACCATTTAGCAcagattatatattttatatccaTTCCATACCAAAAATAGTTTCACATTCATTTATTATGAAAGCCGGCTAAACTACCCAAATAGCACTTTTCTACAAGATCAAATACAGGTGTTGGAGTTAAATGCCTTGCTAAAAGATATTACCTTTTTTTACTACTGATTTTGTAGCTTGGTAAAAGTGAGCTTTCATTCATTTAAAATGCTCTTATATCTATATTCATAGTAGTGGTGACTTGTCTTAGTGATGTCATTGATGTTTTTCTTGGTTAATTGTAATCTTTGGTGAGTGTGAGAAAGCATCTGTTTTGCaagataatgcagggtgttggaAGTGGCTCATTGCCAGCAGTGTACTAAGGCAATTAAAAGAGCAGTGATTTAAATGTAAAGGGTTAGAGCATGTCTGAGTGCATGGGAACATGTTGAAATAAGCTGATGATGGAGACCTGTGCAGCTGTATCTACCTCCATGGTGTATGGCAGTGATTGTTAAACTTGGGATGTTTTGGGAGATTTCACTTTTGTTGCAAGCAATGTAAAATTAATTGTTATTATTCTCAATGTATATCTCCCACAATATTAAATTTTATAAATTACTTTGGAGATTATTTATAGTCACATTGACTTATCCTGTAAACTTTCTATTAAAGTGCTGTATGAACTGTTCATTTTCTAGTGGTTATCTGATAGTGTTCATCCCAAACAGAGCCACTGTTAAAACGCAGTGTCTATGAAACTTCACATCTCAGTGTTTTTATATAGCCTGTCAAGAGAAACTTTGTACTTTTGATAATATGTACAATATTATGGACATGTAAGCTAATCCATGTACACAGTAGCTAATGAACCCTTTATATTTGCAGCATTTCTTAATCCTTCACATATATATTCAACCTGCATCGGCCATTGTGCCTTGCTGTAATGTTTACTTAAAATAACTGCAAATAAACACGAACGTGTCAGCATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207237 lncRNA downstream 112477 73233202 ~ 73265698 (-) True G182648
TU207136 lncRNA downstream 264295 73107475 ~ 73113880 (-) True G182553
TU207137 lncRNA downstream 264730 73107133 ~ 73113445 (-) True G182554
TU207135 lncRNA downstream 264834 73107045 ~ 73113341 (-) True G182552
TU207067 lncRNA downstream 311451 73061331 ~ 73066724 (-) True G182494
TU207334 lncRNA upstream 23169 73408766 ~ 73410961 (-) True G182734
TU207423 lncRNA upstream 176318 73561915 ~ 73562219 (-) True G182820
TU207424 lncRNA upstream 177335 73562932 ~ 73563178 (-) True G182821
TU207427 lncRNA upstream 179685 73565282 ~ 73565492 (-) True G182824
TU207429 lncRNA upstream 181412 73567009 ~ 73567506 (-) True G182826
XM_036955153.1 mRNA downstream 4497 73365566 ~ 73373678 (-) True kti12
XM_021571272.2 mRNA downstream 4737 73365566 ~ 73373438 (-) False kti12
XM_021571234.2 mRNA downstream 49297 73324175 ~ 73328878 (-) True LOC100653450
XM_021571178.2 mRNA downstream 85356 73176721 ~ 73292819 (-) False scaper
XM_021571322.2 mRNA upstream 33018 73418615 ~ 73440795 (-) True alpk3a
XM_036955271.1 mRNA upstream 194299 73579896 ~ 73592472 (-) False blm
XM_021571388.2 mRNA upstream 194299 73579896 ~ 73605871 (-) False blm
XM_021571397.2 mRNA upstream 194299 73579896 ~ 73605871 (-) False blm
XM_021571402.2 mRNA upstream 194299 73579896 ~ 73605873 (-) True blm
TU207306 other downstream 32328 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 299796 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 311451 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 316862 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 504430 72872744 ~ 72873745 (-) True c2cd4a
TU207489 other upstream 290615 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 607481 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 721286 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1345275 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 2220630 75606227 ~ 75606648 (-) True LOC110496186

Expression Profile