RNA id: LOC110495840


Basic Information

Item Value
RNA id LOC110495840
length 1824
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC110495840
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73400259 ~ 73405787 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTTCTATATCACAGGCTATGTGGCATACTTCATCACAGCATGCATAGTAGACTTTGAGAGGGCCATTGCCCTTGTGGTCCTCACCAGTTTGGCAGTTGTCTCCAAAGCCTATGACCTTGTGAAGACATACCATGGAGATAGCATAACCAAATGTTTCATACCAGctcaaagatgcttcaacaattTCCCGGGATGGATAATAGGAGTTTTCGTTGTGGTGCTGGTCCTGCTAGTGACTTGGCTCGTTGTGGGCACAAGCAAGCGACCAGAGCAGCTTATCTCATTTGGAGGGGTCTACTTGTTCATTCTAGTCATTTTCATCTTCTCAGCCCACAGGACAGAGGTGGCATGGAGGTCAGTTTTTTGGGGTCTTGGTTTACAATTCTGTATCGGACTGTTTGTCATAAGGACAGAGCCAGGACTCACAGCCTTCCAATGGCTTGGAGAGCAAGTGCAGATATTCTTGAACTACACAAAACACGGGTCATCATTTGTTTTTGGACCACTAGTATCCGACATCTTCGCATTTCAGGCTTTGCCCATTGTGATATTCTTCAGCAGTGTGATGTCAGTTCTTTATTTCCTTGGAATAATGCAATGGCTCATCATTAAGATCGCATGGGTAATGCAGATAACGATGGGAACCTCACCCACTGAGACCTTGAGTGTTGCAGGCAACATATTTGTTGGACAGACTGAAGCGCCATTGCAGATTCGCCCCTATTTGATGGACATGACCAAATCTGAAGTGCATGCTGTCATGGTTGGAGGCTTTGTTACCATTGCAGGAAGTGTGATGGGTGCATTCATCTCATTTGGGATTGATGCATCCTCTATGATATCTGCCTCTGTAATGGCTGCCCCATGTGCCTTGGCAATCTCCAAGCTGTCCTATCCGGAGACAGAAGAGAGCAAATTTACATCAGAGGGAAAATATCAAAGTGGCTTGTGgTGATGAACAGAACATTTTGGAAGCAGCTAGCAGTGGAGCATCTACATCAATAGGCCTTGATAGCATTCCTTGCGATACTGGCATTCATCTATGCATCTCTTGGCTGGCTGGGAGGCCTGGTGGGATTTCCCTCTATCACATTTGAGGTATGCTCCAGGCAGCTCCACATACCTTAATCCCATTTCACATTCAAAGATCCTTCTGTCTTGACTTGACATCCATGACTAACCCAGTACTTTGTGATGAGTGATGGACATGCTttggcattttttttatttaacagcGTGTGATGCATGGCTGAATAATTGTGAACATCACAAAATAAGATAAGATAATTATTTCATTGTGCCTTGGTAAAATGTCCAAATCATCGAAATGTGTAAAATAATTCAGATTAGAATATCTGGGGTTCgttccttgttccttgtcaatcattggctcattggtgaaattagcattatgacaATAGCTTTAATGAAATCATTCAAAAtactttattaatgcaattgcagacagaagttgacaagtGGTGCATATTACGCATGTTCCTGAGTAAGTTCTGCAAAATAGAAAAGGTCCCAAGTTATTTTATTAAATCCGAAGTCCATCCCTAGTGATGTCACTGCATACGTCGTTACATTCTACTCATCAGACCAAGCTCATGCATACACAGCTATATAAACTTGCAAGAGAGATACGATAGTTCCAGTGTTTTCTAAGGCCTAGGCAGTGCAGAGTTTTGTCTCAGTCCCACATGTCTCAAAATGTTTCTTTATAAGATatctatacctacagtatatctatcctaccctgcctttctaaggtcttcgaaagccaagtcaacaaacagattaccgaccatttcaaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206492 lncRNA upstream 33276 73365579 ~ 73366983 (+) True G181965
TU206529 lncRNA upstream 60187 73339463 ~ 73340072 (+) True G181994
TU206523 lncRNA upstream 71398 73327462 ~ 73328861 (+) True G181989
TU206473 lncRNA upstream 103576 73269027 ~ 73296683 (+) True G181948
TU206453 lncRNA upstream 127227 73244895 ~ 73273032 (+) False G181930
TU206558 lncRNA downstream 7875 73413662 ~ 73414721 (+) True G182020
TU206665 lncRNA downstream 167818 73573605 ~ 73573921 (+) True G182124
TU206576 lncRNA downstream 181317 73587104 ~ 73587665 (+) True G182037
TU206699 lncRNA downstream 229840 73635627 ~ 73636093 (+) True G182154
TU206700 lncRNA downstream 230763 73636550 ~ 73636988 (+) True G182155
XM_021571258.2 mRNA upstream 37729 73361309 ~ 73362530 (+) True LOC110495809
XM_021571245.2 mRNA upstream 39090 73351800 ~ 73361169 (+) True si:dkey-24l11.2
XM_021571221.2 mRNA upstream 83309 73299580 ~ 73316950 (+) False LOC110495782
XM_021571214.2 mRNA upstream 83309 73300171 ~ 73316950 (+) True LOC110495782
XM_036955085.1 mRNA upstream 231056 73163861 ~ 73169203 (+) False isl2a
XM_021571345.2 mRNA downstream 3265 73409052 ~ 73418838 (+) False slc28a1
XM_036955208.1 mRNA downstream 3325 73409112 ~ 73418838 (+) False slc28a1
XM_021571335.2 mRNA downstream 3327 73409114 ~ 73418838 (+) False slc28a1
XM_021571355.2 mRNA downstream 3475 73409262 ~ 73418838 (+) True slc28a1
XM_021571375.2 mRNA downstream 30347 73436134 ~ 73454862 (+) False malt3
TU206530 other upstream 57982 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 57982 73341707 ~ 73342277 (+) True G181995
TU205289 other upstream 1146532 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1335064 72059717 ~ 72065195 (+) False LOC110495604
TU206574 other downstream 170978 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 201105 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 216749 73622536 ~ 73624518 (+) True G182144
TU208054 other downstream 1123862 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1305794 74711581 ~ 74714114 (+) False LOC110496107

Expression Profile