RNA id: XM_021571355.2


Basic Information

Item Value
RNA id XM_021571355.2
length 2343
RNA type mRNA
GC content 0.42
exon number 17
gene id slc28a1
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73409052 ~ 73418838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAACATAGCATTCGTCACACAGACTAAGAACACTCACAATGACAGAAGCCACTGGTACAGCGCTCAAAGTTCTGTCTCATGTTAATGGGGTGGTCAATGAGGGATTTGAAACACAGTAAGGTTTCCAAGCCTATTAATGCCACAGAGGATTACTTTAGAGCTCACGCCAAAACCATCAAATACATTGTACTGGGCTTGCTTGGAGcagGCTATGTGGCATACTTCATCACAGCATGCATAGTAGACTTTGAGAGGGCCATTGCCCTTGTGGTCCTCACCAGTTTGGCAGTTGTCTCCAAAGCCTATGACCTTGTGAAGACATACCATGGAGATAGCATAACCAAATGTTTCATACCAGctcaaagatgcttcaacaattTCCGGGGATGGATAATAGGAGTTTTCGTTGTTGCGGTGCTGGTTCTGCTAGTGACTTGGCTCGTTGTGGACACAAGCAAGCGACCAGAGCAGCTCATCTCATTTGGAGGGGTCTGCATGTTCATTCTAGTCATTTTCATCTTCTCAGCCCACAGGACAGAGGTGGCATGGAGGTCAGTTTTTTGGGGTCTTGGTTTACAATTCTGTATCGGACTGTTTGTCATAAGGACAGAGCCAGGACTCACAGCCTTCCAATGGCTTGGAGAGCAAGTGCAGATATTCTTGAACTACACAAAACACGGGTCATCATTTGTTTTTGGACCACTAGTATGCAACATCTTTGCATTTCAGGCTTTGCCCATTGTGATATTCTTCAGCAGTGTGATGTCAGTTCTTTATTTCCTTGGAATAATGCAATGGCTCATCATTAAGATCGCATGGGTAATGCAGATAACGATGGGAACCTCACCCACTGAGACCTTGAGTGTTGCAGGCAACATATTTGTTGGACAGACTGAAGCGCCATTGCTGATTCGCCCCTATTTGAAGGACATGACCAAATCTGAAGTGCATGCTGTCATGGTTGGAGGCTTTGCCACCATTGCAGGAAGTGTGATGGGTGCATTCATCTCATTTGGGATTGATGCATCCTCTATGATATCTGCCTCTGTAATGGCTGCCCCATGTGCCTTGGCAATCTCCAAGCTGTCCTATCCAGAGACAGAAGAGAGCAAATTTACATCAGAGGAAAATATCAAAGTGGCTTGTGgTGATGAACAGAACATTTTGGAAGCAGCTAGCAGTGGAGCATCTACATCAATAGGCCTTGTTGCTAATATAGCTGCCAACTTGATTGCATTCCTTGCGATACTGGCATTCATCAATGCATCTCTTGGCTGGCTGGGAGGCCTGGTGGGATTTCCCTCTATCACATTTGAGATAATCTGTTCCTATGTGTTCATGCCTGTGGCCTTCATGATGGGGATACCATTTGAAGAGAGTTTCATAGTAGCGGAACTCATCGGCACCAAGCTCTTCCTCAATGAGTTTCTGGCATATCAGAAGCTGTCAGAGTTGAAGAGTAACAGAGTCAACGGTCTGGATGAAATGATTGGCGATGAGAGGCAATGGATCTCCGTCAGATCAGAGATCATCTCCACTTTTGCTCTGTGTGGATTTGCCAATTTCAGCTCACTGGGGATCGTAATTGGAGGCCTTTCCTCCATATGCCCATCCAGAAGAGCCGACGTCTCCTCTTTGGTATTGAGAGCCCTGTTCACTGGGACCTGTGTGTCTCTGATTAATGCCTGTATTGCAGGTATTCTCTTTGTTCCTCCTGTTGACTGTTTGGATGTTTTCGGGACGTCCTTTTTCAACACCACAAATATAGACCTAAAAAACTGCTGTACTGATCTCTTTGGAAGCACTGTGAACAATGGGACCATCTCATTTGAGGGCTCCTGGAGCACGGTGACCAATGCCACTTTGTACTTTACGAACTGCTGTGATCTCTTTGATTATGCAGTTTGTAACTAGGTCTTCCTGTAAGTCATTTTATGTGTTAATTACCAGTGAGTAGATCAACTCATTCAGCTCTTTGTGTTTTCAGTATATATTATGTTTCAtaactttttttcacatttgaTTGTATATATTTATACTATAAGTAATGTAGATTAAACTCCATCCAGAGATTACAAAATGAAGATAAAGCTTGTACAGATAAAACAAATCCTTTAACGGGTTTTTACAATTTTATTTATGATAAATATAGTTCTTTAGTTCTAAAGATTCACTCTTTCATTCAAAGAGTCAGAGAACAGATATATTGGAAATCAATGCAAAGAAATGCGGAAATGTGCTAAATAAGGATTGGAAATTGTAAGAGTGGATTATTTGCAGTGAGTAAATCAGTAAGTCAAATTCTGCATTGTATCTAAATAAACAGTATGTGAAAATATGAA

Function

GO:

id name namespace
GO:1901642 nucleoside transmembrane transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0005415 nucleoside molecular_function
GO:0001882 nucleoside binding molecular_function

KEGG:

id description
K11536 SLC28A; pyrimidine nucleoside transport protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206378 lncRNA upstream 1925 73136787 ~ 73407337 (+) True G181859
TU206492 lncRNA upstream 42279 73365579 ~ 73366983 (+) True G181965
TU206529 lncRNA upstream 69190 73339463 ~ 73340072 (+) True G181994
TU206523 lncRNA upstream 80401 73327462 ~ 73328861 (+) True G181989
TU206473 lncRNA upstream 112579 73269027 ~ 73296683 (+) True G181948
TU206665 lncRNA downstream 154767 73573605 ~ 73573921 (+) True G182124
TU206576 lncRNA downstream 168266 73587104 ~ 73587665 (+) True G182037
TU206699 lncRNA downstream 216789 73635627 ~ 73636093 (+) True G182154
TU206700 lncRNA downstream 217712 73636550 ~ 73636988 (+) True G182155
TU206757 lncRNA downstream 287494 73706332 ~ 73766435 (+) True G182209
LOC110495840 mRNA upstream 3475 73400259 ~ 73405787 (+) True LOC110495840
XM_021571258.2 mRNA upstream 46732 73361309 ~ 73362530 (+) True LOC110495809
XM_021571245.2 mRNA upstream 48093 73351800 ~ 73361169 (+) True si:dkey-24l11.2
XM_021571221.2 mRNA upstream 92312 73299580 ~ 73316950 (+) False LOC110495782
XM_021571375.2 mRNA downstream 17296 73436134 ~ 73454862 (+) False malt3
XM_021571366.2 mRNA downstream 22627 73441465 ~ 73454862 (+) True malt3
trnah-gug-2 mRNA downstream 36594 73455432 ~ 73455503 (+) True trnah-gug-2
XM_036955241.1 mRNA downstream 37831 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA downstream 37837 73456675 ~ 73578179 (+) False LOC110501876
TU206530 other upstream 66985 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 66985 73341707 ~ 73342277 (+) True G181995
TU205289 other upstream 1155535 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1344067 72059717 ~ 72065195 (+) False LOC110495604
TU206574 other downstream 157927 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 188054 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 203698 73622536 ~ 73624518 (+) True G182144
TU208054 other downstream 1110811 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1292743 74711581 ~ 74714114 (+) False LOC110496107

Expression Profile