RNA id: XM_021571322.2


Basic Information

Item Value
RNA id XM_021571322.2
length 8344
RNA type mRNA
GC content 0.46
exon number 14
gene id alpk3a
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73418615 ~ 73440795 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTTGCTTGGTCAACTATGATAGTGTATAATGGTCTGATATCTCTTGTGATATTTATTTGACATACTTTCTTCCAATTTGAAATATATAGATTTTTCCTCAGACATTACCTTTAGCCTTCTCTTGTTGAATATATGTCTGAAGGCTAGCTTGGGAAAATGTGATGTGCACTTGCAGCTATTTGTAGGCCTGCTATAAATAGTGTCCTGATGGCACCACAAGCACGCCTATGATTGACAATTGCATTCAGAGTTTTGCTGCTGGGAATCAGGCTCCAAAGGACACTGAAAAGCCTATAAATGCAACTCTTACATCGGTAAGACACTGCAACTTGAAACTGGGGCTTTGATCCATGCCAAGCTGAGCATTTTTTACTCAAGGACCAGTCTTCGGTAGTAGACACTTTTCCTTTATATTTGTGGGAATATCTGTTGAGTGGACAATGACTTCCAGAAGACCACTGACCCGTTCTTACTCTGGCAATGGGAGGACCGGCGGCAGCTACAATGAGGAGGAGGTCAGCTCTTCGAATGGCCGCTTGGAGAGCTGCAACTACCTCTCCAATGTCAGGCCCGGAAACAGGAGTACATTGTTCGGTGTGATGGCTCAGCTGACTGAGGACACCCAGCCTGTATTTGAGACCACCTTAAAATCCAAGGCCGTGTCAGAGAACTGTAATGTGAAGCTGACATGTGTGGTTACAGGAAACCCAGCCCCAGAACTGACGTGGTACAGAGACGACATGGAGTTGGACCGATACTGCGGTCTTCCAAAATATGAAATTGGCCGCaatggaaaaacacacacactccaaattTACAACTGCACAGTGGATGATGCAGCCATCTATCAGGCTTCAGCCAGGAACAGCAAAGGCATTGTCTCCTGCTCTGGGGTTCTGGAGGTGGGCACCATGAGTGAGTTCAAGATCCACCAGAGGTTTTTTGGCAAGCtgaaagagaaggcagagaacAAGAAGAGGGAGTTGGAAGAGAGCAGGAGAAGGGGAAATGAGAATGTCCAGAAGGATCCTCAGGAACAGAAGCCTCTCCAGAACAGCCCGATCGCCCCTCAGAGGAAGCGCCGGACCCCAagtgccctctcttcaccaccgAATGGGGAGGAGAACACAGTCAGCCAGGGGGCAGTGGCTGTAGAACCTAATGGGGCCAGTGCTGAAGTCAGTGAACCGGCCCCAGTGACGACTACAGAGAATGGGAGCAAGACTCCCAACAATGACTTTGACAATGTGGAGATTGTCACCACCAAGCCCCCAACCACAGAAATATTTGCCAAAAAAAAGATGAAGATCTCAAATGGTATAGATTCTGGGGTTGTCAGCAGTAACAGTAGTCATACAGGACCGGGCACCAGTGAAAATGCATATGATGGAGGAATAAGTTTGGCTCAATTTCTGTCAGAGACCCTTCATTCACAGACTGCTGAAGAAAATAAGATCCCTGCACAAGTGGAGGAAACTGTGGCAATGGAGGCAATGGATACTACTACTACAGATCCTAAAACAAATGCAgaaaaacagaaagaaagagaggagaaggggagagagagggcagaaagaggaagggcggagagagagaggatgcttGGAGAAGAACAGGAAAGAGAGAAAATGTCaattgagagagcaagagaggcagagcagttgcaaAGGACAACAGGACATAACAACACTGCCTCAGAGGTCAGAATGGAGGCTAAGACGCATGTCCATAAGGAGGGAGATCCTCAAGATTACCACCACATTCAGGAAACACTTTCCAATGTGCTCCACTCAGTCAAATACTTTTTCTTTGGTAAGAGTAAGAAGGATCATGCTTCTTCTGATCATCATGTGAAAGGTCAGGAGAAGGACAGAGGTCATCCAGTTGCCCCAACACAGCCGTACCCTAGCCCTCCCCCTCCACAGGAGCCAGATGGTCACCCAGAGGTGTATAAAACCCCCACAGAGGAGACAGTGCCCATGGTGGTAGTAGCACCAAAAACTAACGTACCACACAAGCAGCTAGCGTCATTTGAGAGGTTGAACCCAGCTGAACACAAGCATGGATTTACTGTTTCACACTCAGAAGAACCCCCGCCAGCTCCCAGAAGAGCACCAGAGAGTGTGCCTGATTCACTGGAGCATGTTGAGCAGAAGGAGGTATGTCCGGAGGTGATGATCAGCAGCAGTACAGAGACAGTGCCCACATCTGGCCCTCCAGCCCTCAGTGAGGCAACTGTGGACCAGATCCAGGCAGACCCTGTCCCCCATGTGATTGTCTCAGCCCCACATGAGCCAAACATCCAAGTGTTTTCTTCCGGGACTGATCAGGTGACAAGACATGATGCCAAAACTGAAGATTTACACAAACAGGGTCCATCTGACACTCCATGGAGCCCAGACCCCAGCAGTGGAGCAAGTTCCCATATGTCAAACCGCACTAGTGTGGGTGAAAGCGGGAGTGCTCCTAACAATAATGTCTCACCCACAGTCAACCTCGGCCTGATGACAGTAACCacagaaagtgagaaagagaaggtAATACATGTGGATGAGAAGGGCATTGGAAGTGTCTATGAGACACAAAATAAATGTTATTGTGCTtttgaggagaaaggagagaaaggtgaTGTCAAAGCAGAGAATCAACCATGTCCCACTTTAAATGTGAGTgttttagaggagaggagagagaagatacaTAACAAGGAGATCCATTTCAAAAGTTTGCTCCCAGAGAGTTCAGAGAATGATGGTCAAAATACACCAGAGGAATGCCCTCCTGTGGCAGGGGGGGACCAATATCTCAACATAAAAGAGAATTCTACCTTAGCTTTGGAGGAAAGCCTTGAAAGTGCCTTAAAAGTGGAATATACTCCTGCTTTGGAGAAAACTTTTGTGGACAGTTCATTTGGCAACCTGAAGATACAAGAACAGGTGGTACCTATTGTGCAGAAAATGTCTGAGCAAAAGGATGTGAACTTAGAGAGAAACGAAGTGCTGACCCGCACAATTGAGAGACATGTTGAAACAGAAGAAAAGGTGACTGAAATAAAGGTGGAAGTGCTGGGTGAATCTAAGATCCACTCAGAGACCCAGCCTGTGAAAGGCTCTGCCATTGTGTCCCCTGTGCCACCAGTGTCAGCATCAGTTACCAGTCCAGAGGCTAATTCCACTCATCTGGGTGGATACTTTGGAAATGTACCACAGATTAGAATGGTAGATTCTGCTCTTAGAATCCCAGAAATCAAAATAATTGTGCCAGAACAACAGATAAAAGAAGAGCAAATGATTATACCAAATATAGAGATTATGGAAGCAGAAGTCAAAGAGCCTACACAGCCATTGATACCTATTACACCCAATGAACCTTCATCAGAGACAGACATTTTCCAAAAGGATGTTGCAAATGATGTGTCAGGCATAATGATAGCAGAAAACAGCTCAGCTTTTACCCCAGTGGTTATAGATGTGACACCCACTCAAGAAAGTATGTGGAATGATGAAATCATCCGACCAACAGAGAAATTGCAGGAAGTTCCACAACCAGTTGAAGAGGCAAAAACACCTACGGCAGAGCAGTCAACTAACATAAAGAATGAGTGGCTCACAAAGACGTTAATTCCTGCAATAAATGTTTCCTATACTGATGACAGTAAACTCAGGAAAATAGATCATGAATATCCACATGTCAAGCCCCCCGTCTTAGATAGAGGAAAGCCAAAGGAAGCACCCAGTGTGCCTCTGCGTGTGGTCCCTCCTATTTCTGAAAGCAAGGAGCTTCCTAAAAATGAGAATAAAGAATCAGAATCATTGGCAGATATGCTCAGGGGGGTCAAGAGTGATTTTGAAAATGTTACTTCCTATAAGTCTGACAAAACCCATAGTGAGCCACAGAAACAGACTATAGAAACAAAGGAACAGAGTATGATAGACAACATCCTCTCTGTGTCATATAAAGCCTTAATGCCAACAGAAGtaacaacaatgcaaaaagcTGTGGACATCAGTTTTACTGAAACTGAAAAAGTAAAACCACTCAAAGAGTCAAGGATAGAGTCTTACATCATTGGCGATGAACCAAGAGAAAGAAACCCTATTGAAAGGCTTGCTGTCAAACCCCCAACACCCCCCAGGAGTCCCAGCAGTCTCCGCAGGCTCACGTCAAGGACTCCCCCTGCCATTACTGTGGATGACCCTCTTAACAGTGAGAAGGCAGTATCGGAGCAGAGTGTTGGAGACACCCCAACGTCCTCCCTGTCCTGTGAGAGCAGCCCCAGGCTGAAAAGAAGGGACAGTCTGACCCTCATCCGCTCTGCCACGCCCGAAGAGCTGGCCTCTGGAGCTCGCCGCAAGATCTTCATCcccagggagggagaaggggttgGGGTAGTGGTGGCACTGGGTGTGGGTGGTAGTCCGCTGGACACCCAGGTCAAAAAGGAGGCTCCATATATGTCACCCAGTCAGGCTCGCAGGGCAGCATTCCTGCAGGCCCCAGCAGGCTCACAGACCCCACCGCTGGAGAGACGGTCCCCTCTTTTGAGCCGTAGGAAGGCCACCCTGGAGGTGCCCAAAGTTGTGGAAGAGATCAGCACTGAGGAGCCAGAGAGCCCCAAGACTGAGGTCAAACCTCCTGAGAAGGAGAAGCAGAACCCCTTCAAAGctcctcaggTTATCCGTAAGATCAGGGGAGAGCCTTTCCCAGATGCCTCAGGACACTTGAAGCTCTGGTGCCAGTTCTTCAACGTGCTCAGTGACTCCACCATCAAGTGGTACAGGGACGAGGAAGAGATAGTAGAGGTGAAAAGAAGTGGAGGAGATGAAAGCCAAGTGGCGCTGGCCATCGTCCAGACATCCAGTCGAGATTGTGGAGTGTATGGCTGCTCAATCAAGAACGAATTTGGGACAGATTCCACTGACTTCCTTCTCAGCGTAGACCTACTTTCAGAGTACTTCCTGCGGGAGGATTTAGAAGTTGGAGAAGAGATGGAAATGACTCCAATGCTATTCACCAAAGGCCTAGCAGACCCGGGCTACTGGGGGGAGAAGTTCTTTGGGCGCATCATGACACAGGAGGCCCACCTGGGAGAGGGCTGTGCACATAAGGCCTGCAGGGTGAAGGTTATCTATGGCCTAGACCCTGTGTTTGAGTCCGGAACCACCTGTATCATTAAATTACAAAGCCCCATCGCCTATGGGACCAAACAGGAGAGCAACCTTGCAGAGAAAAACATGGAAATTACTAAGCAAgagtgCAAAATCCAAAACACAGTTCGAGAGTATTGCAAAATCTTTGCAGCTGAGGCGAGGGTGATTGAAAACTTTGGCTTTTCACTGGAAGTGATCCCTCTCTATCTGGTGTACCGCCCTGCCAACTCTGTCCCTTACGCCACTGTGGAGGCTGACCTGAAGGGCATCTTCCTTAAGTACTGTATGATGGATGCCAAAGGCAGGCTGATCACCAGAGCCACCTCAGAGGTGGAAATGAAATGCTGCTCCTTCCAGCATTGGATCCACCAATGGACAAACGGCAACTTACTGGTTACTGGGCTGGAGGGTGTTGGACCGAAGATCACTAAAGTTAGAATTGTCACGAAATCAAAGGGGTATCAAGGCCTTACAGATGATGGTTATCCTAAGGTGTTTGAGCAGTTCCTGACCCAGCATCAGTGTAACTACTACTGTGGGCTCCTCAGCCTGAGAACTCTGAAGCCCATGGACACCCTGCAGCAGCCCCCCAAGATCAAAGGCTCCCGGAGCCCCTTGCTCGGCAGGAAGTTAGGCTCGTCCAGCCCTCAGCACAATAGGAAGTTGGGCTCATCCAGCCCCCAGCTGCAAAGAAAAGGACTGAACAGCCCCTTGACAACCAGAAAGGCCACCTCCAGCCCAAAGGTGCCTAGAAAGACTAgggagacagaagacaaccaGTCCACAGCCAAACCCAAGGCGGAGGAGAGTATCAAAGTTGTGGTATGAGGTAGCAACGTCCAAAGGGAATACATATCAAAGCAGCTTCCCTTTTCTTTCACGCCAACGTTCAGCTTTTTTATGTTTTCCTGTCACCCATTGCTGTATTTAGTTGGGTTGAAGCAAGGACGACCAGCATGGCCTTGAACAAAATGTTACAGAGCTTGTGCCTGAAAAGTCTTCATCCAAGAAGGAGAGACAAACAGGGAGATGAGTTCAAATCTAGGGAATAGGTCACCCTAGGGGATATTTATATAACATTACTGTGAATTTCTCAATAACCATCAGTAGTAGTGAGATACTCCCCATTCTCCAGCTTTATGCTGAAATGGTTTAAGTGAGTGGAGGAGGTACAGGACCTTTAAGAAAACTTCCAGCACTAAGGAAATGGGACACAGTTTTCTCTCACATCCAGTACAGTCCTCTTCAAAAGAAGAGacttgtgaagtggttgaaacaATGGTGCTGGATACAAAGCCGTGGCCGTAAGCAGAGCTCTAATAGCTTGATGCAGATGCAAGGGTAGTGAAGTGCACCAACTGCATTGTACATCTGGGATGTATAAGTCTTGGTCATTGAAATTGTTTTTGTTGAACAGTAATTGGATCTTGTTACTGTTGGTCGTATAGCATGCTCTACTTGTTTCTATTATGGCATTATTATGTCCTTAAACTACGCATTACAGTCTTCCGAACACTGAGCAAAGACAACACTACTCTTGCCTCTTCACTGGGAATATGTTTTTGTGCACTTTTTTTGCCAAATGTTTTCTTGCCTTTTGAAAACTGCCAGGTTTTAGTAGTTCAGTTCATTTTTGTTGAACTTTGTTCAAATCCTGTAATCTGTTCATTGGAAATGAACATGTTCACATGCTTAAGTCTGTACACCGATCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTTAAaggaatagtacagtagaccGATCCCCTTAACCTGGTTCTTTAAaggaatagtacagtagaccGATCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTCAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTTAAaggaatagtacagtagaccGATCCCCTTAACCTGGTTCTTTAAaggaacagtacagtagaccgATCCCCTTAACCTGGTTCTTTAAAGGAATAGTACAGTACACCGATCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTCAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTTAAaggaatagtacagtagaccGATCCCCTTAACCTGGTTCTTTAAAGGAACAGTACAATAGACCGATCCCCTTAACCTGGTTCTTTAAAGGAATAGTACAGTACACCGATCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTCAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTTAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTCAAaggaacagtacagtacaccgaTCCCCTTAACCTGGTTCTTCAAAGGATTGACTCTTTAACTGACCTTGAGTGTTGAAGAGCAATAAAGGGATTACTGAAATAAACACTTTAACTTTGGAATGCACATGTTTGGTGCCATTTAAATGGGTCAACTCACAAAGTGAAAGAATAAGAGCTATAATATCAGAACCATGTAGAAACTGCTTTGGACCTGGCCCATGATCACAGTAAAGCAGTAGCTCACCTCCAGCTGACTTTTGTGACTGAAAATGATATGCATTCTCAACATTCACACTTCTGGGGGAGGGGTGGGATGGGGATATTGTCACTAGTTTGAAGCGTacagtatgtgaatgtgtgtgtgagtgtgtgagtgagagcgtGCAAGAGGGATTAAGAGTGTTTGATATGTTGGCAGAATGCTAATGAAATGAATGTCCCTGACACTGTAATATCTGGTATGTTATGTTGTGATTTTGTACATACAATTCATGTCAAACGTTCATATTCATATTTTCACATACTGTTTATTTAGATACAATGCAGAATTTGACTTACTGATTTACTCACTGCAAATAATCCACTCTTACAATTTCCAATCCTTATTTAGCACATTTCCGCATTTCTTTGCATTGATTTCCAATATATCTGTTCTCTGACTCTTTGAATGAAAGAGTGAATCTTTAGAACTAAAGAACTATATTTATCATAAATAAAATTGTAAAAACCCG

Function

GO: NA

KEGG:

id description
K08868 ALPK; alpha-kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207334 lncRNA downstream 7654 73408766 ~ 73410961 (-) True G182734
TU207237 lncRNA downstream 152917 73233202 ~ 73265698 (-) True G182648
TU207136 lncRNA downstream 304735 73107475 ~ 73113880 (-) True G182553
TU207137 lncRNA downstream 305170 73107133 ~ 73113445 (-) True G182554
TU207135 lncRNA downstream 305274 73107045 ~ 73113341 (-) True G182552
TU207423 lncRNA upstream 121120 73561915 ~ 73562219 (-) True G182820
TU207424 lncRNA upstream 122137 73562932 ~ 73563178 (-) True G182821
TU207427 lncRNA upstream 124487 73565282 ~ 73565492 (-) True G182824
TU207429 lncRNA upstream 126214 73567009 ~ 73567506 (-) True G182826
TU207432 lncRNA upstream 129407 73570202 ~ 73570423 (-) True G182829
XM_036955163.1 mRNA downstream 33018 73378175 ~ 73385597 (-) False znf592
XM_036955169.1 mRNA downstream 33018 73378175 ~ 73385597 (-) False znf592
XM_036955180.1 mRNA downstream 33018 73378175 ~ 73385597 (-) True znf592
XM_021571293.2 mRNA downstream 33019 73378175 ~ 73385596 (-) False znf592
XM_036955153.1 mRNA downstream 44937 73365566 ~ 73373678 (-) True kti12
XM_036955271.1 mRNA upstream 139101 73579896 ~ 73592472 (-) False blm
XM_021571388.2 mRNA upstream 139101 73579896 ~ 73605871 (-) False blm
XM_021571397.2 mRNA upstream 139101 73579896 ~ 73605871 (-) False blm
XM_021571402.2 mRNA upstream 139101 73579896 ~ 73605873 (-) True blm
XM_021571425.2 mRNA upstream 166094 73606889 ~ 73610117 (-) True ctsh
TU207306 other downstream 72768 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 340236 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 351891 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 357302 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 544870 72872744 ~ 72873745 (-) True c2cd4a
TU207489 other upstream 235417 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 552283 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 666088 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1290077 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 2165432 75606227 ~ 75606648 (-) True LOC110496186

Expression Profile