RNA id: XM_021571375.2


Basic Information

Item Value
RNA id XM_021571375.2
length 2549
RNA type mRNA
GC content 0.49
exon number 15
gene id malt3
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73436134 ~ 73454862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccattGCGGCCAATTTCATATTTTGGAAGACCGCAGTATCGGTCCAACTCCATGTCGTCTCTGTACCACGTCAGTTCTGGGGCTGGGTTTCCTGTGGACATCACATGGAGATGGCAGCACAGTGCAGGAATGACCAGAACCAACTATACTTGAGGTTTAGAAGCTCCTATTCCACACTGAAGTAATGAAAAACATGATCAGAGACCTTGTCATTGTGCAGCATCCTGTTTCTGTGAGTGTACCACTGAACTATCAGGTGAATCTGAGTGTgagagcagaggggacaggtaTCCTGAACTACCAGTGGTTCAAATCTGATGAAGAGGAGgtatttggTGCAACCAGAGCAGATCTGACTGTCACAGCCCAGAGGTCTCAGCTCTACATTTGCAGAGTGAATGACCAGTTCTGCAACTGTGTGTTCAGTGAATGGGTCAAAGTAAAGGTCCCGGACATTGCTAAACCAGGTCTCCCAGTAGCCTGGCGAGGGGAGCTCCATATTGCTGTACACCCTGCACCCCAGACTGTCAGACAGGGGCAGAGACTCACCCTCAGCTGCTCTGCCTTTGGCATTCCCATCCCACACTACCAGTGGTACAGAAATGGACATCCTCTGCTGGGCAAAACCACTAACACATTGCAGATACATAATGCAGAGGCAGACGATAGAGGAACATATCTCTGCTCTGTGTCCAATGTTGAAGAAGAAAGATGGACAGAGCCAGCTGATGTTGATATAGAGCCATCTAATCAACTCAAAGTCACAGCTCCAAAACTCACAGCGACTGACAAAGTGGCCCTGCTTATTGGTAACCTCAACTACTCCCACCACCCGGACCTGATGGCCCCCACTATGGATGTCCATGAGCTGGCCAACTTGCTGCAGCAGCTGGGCTTCAGAGTGGTGTCTCTTCTGGACCTCACCAGGGAGGAGATGCTGGCAGCCATTGACAAGTTCATTCTTCTGCTTGACAGGGGCGTGTATGCCCTGTTCTACTATGCTGGTCATGGGTACGAACGTTCAGGGAGGAACTACCTGGTGGCCATAGACGCTCCACAGCCCTACCGTCCAGAGAACTGTGTCTGTGTACAGAGGATCATGCGCATGATGCAGGAGAGACGGACtgcattgagtgtggtcttactAGACACCTGCAGAACATGGTACAACCAAGATTGCATAGCTTCTGAAATCAGGCCCTTGGTACCCATGGGAAACACAGTGTATGGATATGCCACATGTGAAGATGCAGAAGCGTATGAGGTGCAGGACGGAGGGAAGAGCACTGGGATCTTCACCAAGTACCTGAACAAGCACATTCTGCAGCCGGAAAAGGTCACTCACGTCCTGGAGCAGGTCTCTGAGGATCTAGGCAGAGACCCTCTGGTCACAGGGAAGCAGGCGGTGGAGATCAAACACACGCTGAAGGAGCCTCGCTCCCTTACAGATCCGGTCAGGACCACCGGCCACACTGGGGAGCTACGGCTGAGAGATGCCTGCTGGAGACAAGCCAACGAGCTACCATGTCAGAAGCTGCTTATTTTCCCCTGTGGAGTTGAGGTGGAGGTCAGCTTCTCTGCCTTGTTCTCTAACGTCATGGTTGCCTTCGGCACAGTGAAAACTATTGGCCCCAGGACCCAGGACTGCACTGTTACTCTGAGGAGCACACCTGCAATGGAGGATATCTTCTCTAGTCCTGGCAGGTCAGGTGAAATGGACTCTCTCTTGCTAAACAACTTGGTTGCTGAAAACCCTGACTGTAGCCTCAGACTTTGTGGCCTTCAAAAGCTCCAGGGATCCTTAGTGATAAAGGTGGACCTACACTATACCCACACGGGCAGCAAGCTGCGGCTGCAAGAGAGCAAACAGCTAGACATAGGAAAACCTTTGGTAGCATCCTGTGATCAGTACAGGGGACAGCAAGCATTGGTGACCCAGAGACAAGAAGGTGCCCCTTCCCAGAGTATGGGCCACGTTTCACACAGCAAGCAGTCCCCACGTCAAACACTGGGACAGCCAGGTCGCCCCTTCACCAGGAAGGCAGAGTGTGCTGCCAAAGTCCCTACAGCAAGGAGCAACGAACCAGAGGAGAATGATGAGACTGAGCCTCAAGACTTTACCTTCTGATTTCCGCTCTCCACGTCTTTGGAAAAAGGatagtttagtagtagtagtgactagTGTAGTCAATAGGATATTTGCTGTTTAGGCTTAAAGCAATGTACATAATTAAATCAGCATGATACATTCTATTTCTCTGGTTAGGCTACATTTCATCAGTTTAATGAtggttatgaggtgtgtgtgtcagtgtgtgtatacatgtggcATGTGAGTTTGAGGAGATTATCTCCTGGATTATGTTCCTCTCTATCTAGCACTATTCGGTTTTTAGTTCTCAGCATGATACCCAAGCAATATTTATTCTTAAATGATCACAGTATGAAAAAAGCTGACTTTTCTACATGCTTgtgaataataacaataataatacacATTTCAGCTCTTATGTACCTGTATGTAACTATTAAAATGAATGAAATACCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206558 lncRNA upstream 21413 73413662 ~ 73414721 (+) True G182020
TU206378 lncRNA upstream 28797 73136787 ~ 73407337 (+) True G181859
TU206492 lncRNA upstream 69151 73365579 ~ 73366983 (+) True G181965
TU206529 lncRNA upstream 96062 73339463 ~ 73340072 (+) True G181994
TU206523 lncRNA upstream 107273 73327462 ~ 73328861 (+) True G181989
TU206665 lncRNA downstream 118743 73573605 ~ 73573921 (+) True G182124
TU206576 lncRNA downstream 132242 73587104 ~ 73587665 (+) True G182037
TU206699 lncRNA downstream 180765 73635627 ~ 73636093 (+) True G182154
TU206700 lncRNA downstream 181688 73636550 ~ 73636988 (+) True G182155
TU206757 lncRNA downstream 251470 73706332 ~ 73766435 (+) True G182209
XM_021571345.2 mRNA upstream 17296 73409052 ~ 73418838 (+) False slc28a1
XM_036955208.1 mRNA upstream 17296 73409112 ~ 73418838 (+) False slc28a1
XM_021571335.2 mRNA upstream 17296 73409114 ~ 73418838 (+) False slc28a1
XM_021571355.2 mRNA upstream 17296 73409262 ~ 73418838 (+) True slc28a1
LOC110495840 mRNA upstream 30347 73400259 ~ 73405787 (+) True LOC110495840
trnah-gug-2 mRNA downstream 570 73455432 ~ 73455503 (+) True trnah-gug-2
XM_036955241.1 mRNA downstream 1807 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA downstream 1813 73456675 ~ 73578179 (+) False LOC110501876
XM_021571436.2 mRNA downstream 278533 73733395 ~ 73737729 (+) False LOC110495913
XM_021571480.2 mRNA downstream 302110 73756972 ~ 73768531 (+) True idh2
TU206530 other upstream 93857 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 93857 73341707 ~ 73342277 (+) True G181995
TU205289 other upstream 1182407 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1370939 72059717 ~ 72065195 (+) False LOC110495604
TU206574 other downstream 121903 73576765 ~ 73580075 (+) True LOC110501876
TU206683 other downstream 152030 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 167674 73622536 ~ 73624518 (+) True G182144
TU208054 other downstream 1074787 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1256719 74711581 ~ 74714114 (+) False LOC110496107

Expression Profile