RNA id: XM_036955241.1


Basic Information

Item Value
RNA id XM_036955241.1
length 5107
RNA type mRNA
GC content 0.45
exon number 14
gene id LOC110501876
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73456669 ~ 73580075 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATCGCTCTCGTTGGTTCTCATTGACGTCTGTCTATTCTAAGGGACCGCCCTCAGGTTGCAAGTGGTGAATGGTCACCCATCGTTCGGCCACGGTTTTGCTCCTGGATCTGGATGCGAGCGTCATTTCAATGATTCCGCACTGTGGCCAgtgtctgtgttgtgttaacTTCGTGGTATAGACTATGCTGCGTCTTGGCAGTAGAATCTTCAGCTGCTGCTAGTCTGGTTGATCGAAAAATGTAGTCATTCTGTGCTGTGTTTAGTTTATTGTTCTGGTCCTAGACGCAGACCAGCAATTCTGTGAGAAGATGTTGAGCCGAATAATGAGTGGCAGCATCAGGAATCTGGATAGAGAATATGACTGCACCGTCAGACTCCTGGATGATACGGAATACACATGCACAATTCAGCGGGATGCTAAAGGACAGTATCTGTTCGACCTCATCTGCCACCACCTGAATCTGCTGGAGAAGGACTACTTCGGCATCAGATATGTGGACCCAGACAAGCAgcggCATTGGTTGGAGGTCACAAAGTGTATTGCCAAGCAGATGAAATCCCAGCCTCCATTCACCATGTGTCTCAGAGTCAAGTTTTACCCCCCTGACCCCGCTGCTCTCAAAGAGGAAATCACCAGATATTTAGTCTTCCTGCAGATCAAGAGAGATCTGTATCATGGCCGCCTCCTGTGTAAGACGACGGATGCTGCCATGCTGGCTGCCTTCATCCTGCAAGCTGAGATTGGGGACTATGACCCTGGGAAGCATCCTGAAGGATACAGTTCTAAATTCCAGTTCTTCCCAAAACATTCAGAGAAGCTGGAGCGACGAATCTCAGACATACACAAGACAGAACTGATTGGCCAGACACCTGACACATCAGAGCTGAATTTTCTCCAGAAAGCCCAGATGCTGGAGACATATGGTGTGGATCCTCATCCATGCAAGGATGTGTCTGGAAATCCAGCCTTTCTTGCCTTCACCCCATTCGGATTTGTCGTGCTTCAGGGAAACAAGAGGGTTCATTTTCTCAAGTGGAACGAGGTGACCAAACTGAAGTTCGAGGGAAAGATATTCCATATATATGCAAATCAGAAGGAGGACAAAAAGATCATCTTGACTTACTTTGCACCAACACCTGAGGCCTGCAAGCACCTGTGGAAATGTGGAGTGGAGAACCAAGCCTTCTACAAGCTGGAGAAGTCGAGTCAGGTGCGGACAGTGTCCAGCAGCAACTTGTTCTTCAAGGGGAGTCGTTTCCGCTACAGTGGACGAGTGGCGAAAGAAGTGATGGAGCAGAGTGCCAAAATCAAACGAGAGCCTCCAGAAATACACAGGGCTGGCCTGGTTCCCAGTAGAAGCTGTCCGTCCATCACTCATGGGCCGCGCCTCACCAGTGTTCCACGCACCCGCCGGAGAGCCGTCCACATTTCCATCATGGAGGGTCTGGAGTCGTTGCGTGACAGTGCCCACTCTACACCTGTGCGCTCTGTGTCCCATGGGGACTCCTTCATGCCGCGCTCCCGCAGCCTAGCCACGGATGCCAGCGAGGGCTCGGCGGTGATCTCTGACGAGGCCTACAGCCCCTCTGACAGCGTGCTGCCTACCCCTGTGGCAGAGCACAGCCTGGAGTTGGCCGTGGCACGCCAGATCAACGGAGCCCCCTGCAGCATCAAGGAGGAGAAGGAGTCGGAGGCAGGCACCCCCTCGGTGGGGGATGCAGGCGACTTGTCAGACAGTAGAGCGACGGTTGAGGGTGCAGAGGGAGCCTCGCCGCTCAGCGAAGTGGAACAGGTGAATACGTTTGTTTTAAGTGTCCTCCGTTTGCTTCTTGTGACCATTGGACTCCTCTTTGTCTTGCTCTTCCTCCTCATCGTCCTCACTGAATCCGACCTTGACGTTGCATTTTTACGTGATATCCGCCAGACCCCCGAATTTGAGCAGTTCCATTACGAATACTTTTGTCCCCTCAGGCGGTGGTTTGCCTGCAAGCTCCGCTGGGCGGGCAGTTTGCTCATTAACAaatgagagagagcatgaggcCGTAGAGCGCGTAAGCCTATTCGGGGTTAGAGAAGAAGATTAAAGCTCCGGAGAGATGGAGGGTAGCCCCTTTCCAACCATGAACCCAGCTTCTCTCATGATACTCCTGGAATCACTGTGCCAGgagattctctctctccctccattttgaGTTACTCCCCCTTTTTTCCCCTTAACCGTTCGTTTGTTTTTTACAAACCCAgaagacatgttttttttttggaatTTCAGGTCATTTCAggtattttattttttcaaaaaataTAAACGAAAAAATAAGAAACTGAAATTAAAGAACTGAAGTATTTTTTAACAGGAACAAGACATTTGGTTGCAACGAATGAATGAATGTTGCCTACATTTACTATGTATTGTTTGGAAAATAAATTGCATTTGCATAGGGGAAGAATGTGATGCAAGGATATCAGGGAAGCCACCAAGTCATCGAAATGGTTCAGAATGAAGTTAAATAAATACAGCTTTGAAAAGTGTTCAGTGAAGTAGACAGTCATGCCTTTTAAGATGAAGAAACATCCATCCCAAGCCATACATCTATAATGGTTTTCATTGATCAGAACAAAGCGCAAGTGATTGAAATTGAGTAAGTCGGGGATGATTACCAAATGCCTTTTATGAAGAAACAAGTATATGATATGAAGAACGTTTTGAATTTGTCGAATTGTTTTAAAGTTATACTTTAGTGGAAATACAATAGGTGTATAAAGTAGAAGCTGTGAAGTTGAAATCCGTTTGAAGTTTTTATAAAGGATACAGTTAAATAAACCAGTGACTATGGTGTTATGTGACCCCATAGTGTCAGTAACTGTTGATGATCAACTTCTTGGAAACACTCACTAGCACCAATAGGACCAGTCTAGGTAGATGTGCAATACTCTTTAGGTTAAATACTTCAGTACTTTTGAATGTGTGCATTTGTTTTGTCATTTTTCTTAATTGTGTTTTATGTACATTTCTTGATTATGTTAAGATCTGTTGAAATGTATGATTTCTTTCAGTTCCATATCAACCTTGCTCTTCATTTTGCATTTTACTGTAATTAATTGTTAGTATAAGTACAATGATGTACTTTTTGTACAAAGTAGTTTGTTTCCTATTATATTGACAGTTTTTCCATGTATATTTTTAACAGAACTGAAATGATATTTTGTTATTGAAGAtgaaattataattttttttagctCTGTGTTTCAAGTGAGGTCTGGCATTTATGGACATATATGAGAAGGGGTTGACTCAAAACCTGGGCTTTTATCCAGATCCACTCCGTATAGATCACAACTCTCTCACTCCACCAGCATGCATACTTTTTAGTTGTCAAGACAACTATTTAAAATGCCCACTGTAGGCCAGGAAGGCACAACAGATGGTGGAGGAACAATACATATTGTCAAAAGTAGACTGGACTACAATACCAACAGAAAACATAGTACTCCAAAGACAATGCAGATTGGTCAGCCGTTTTCCACGGTTTGAGAGGTGTCTGTGCAGACTATTCTGTCTCATAGCTCAAGGGAGCAGTAATTCTGCTGTCATGGCTATTATTGGGTCAAATCTGTTTTTGTGGGGTTTCGTCTCTACCTCCTCTACTGTACCTGGTCCAGGTGTGAGTGTgctttgtgtgtttgtatgtaggAATGTAACACACTTCAAGCTGATAATGTGAAGTGTTGACAGATAAAAAATATGGtcttcattttttttaaagtgagaGAAAACGATAAAGAAAGATATTGAAAGAAAGAGATTGAAGGAGAAAAAGGTAGAGGTTCAAGGGATGTCAAAATAAATGAGCACTGATGAGTCGACCAGCCTCACATGCCACGAGGCCGGTACGAGTATAATCAAAGGGGAATGCATATGTGACCATTTGGTGCTCGTGACTATTGGCTTGCAGCCATTCTTGTTTTGGCCTGTTATTTAACACCATGACCTCCACACAGCTGCTCCATGCTCTGATCCCCCAGCGGTGCTGTTGCCTGCTCTGCCCTGGGGAGCCCAGCCTGGGCCCATGTATCCAGAGCACTACATCCCCTGGCCCTGAGTGTAGTCTGTCCCCCAACAGCACCCGCTAGTTGAAGTAGACCCAGCAAGGAAGACACTGCAGCATATACTAGTCAGTGCTACGGCTGGGTGTCTACTGTGGTCCTAGACATTTCAGTTCTTAACCCTCCATCAACAGTGTGGGGCCCAGACATCTGCTGTGTGAAATACCCATGTTTATGGCAGAGGTGTGCTAAAAGCAGCCCTTAgtagcaaatctggtgcagtaaCAGTTACGTACCATAGAAAGGCAGAAATTCCTGAGTCAAATATGCATGCTCCTTATGCTAGTGTATTATGCATGCACTTCCAATGAACAGCACACAAAGATAGAGGATGACTTGAAAGGTTGAATTTGTCTGTacctggatggggagtgttgatCCAGTATGCAAGATAACGGTACTTTTTCGTTATTTTATACTTTCATATTTCCTATTTATAACTTGCCTAATGCTAAATACTGTAAAGGTGAACAAGACAGTTCCAGACAGTCTGTTAGTGTTACTTCTTAAAGGTCAGGGAACTGGAAGAGAAAAAAGGTCAATTGATGGTCTATGTTCGTACACATTATCAGCATTATGCAGCTTTAATGTTCTTTCCAAGCATGCAACAATTAAGGCAGCATCATTCAATAAGCAATAATCAGTCAAATTGTAAGAGCAAATGGACATAGAAATGTAAACAGAAGTCTTACACTGGACATTGTGCTGTTTTCTTGCAGTGTCAAAAATCAGTTGACTGTCATTGTATACTACatggtcaaaagtatgtggacatcccttcaaattagtggatatggctatttcagccacacctgttgctgacaggtgtgtaacaTTGAGCACATAGCCATACaatttattgtgaagtggaaacgtctaggagcaacaacggctcagctgcgaagtggaaggcaagctcacagaacaggacagctgagtgctgaagcgcgtagcgcctAAAAATcatttgtcctcggttgcaacactcactactgagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206558 lncRNA upstream 41948 73413662 ~ 73414721 (+) True G182020
TU206492 lncRNA upstream 89686 73365579 ~ 73366983 (+) True G181965
TU206529 lncRNA upstream 116597 73339463 ~ 73340072 (+) True G181994
TU206523 lncRNA upstream 127808 73327462 ~ 73328861 (+) True G181989
TU206473 lncRNA upstream 159986 73269027 ~ 73296683 (+) True G181948
TU206576 lncRNA downstream 8924 73587104 ~ 73587665 (+) True G182037
TU206699 lncRNA downstream 57447 73635627 ~ 73636093 (+) True G182154
TU206700 lncRNA downstream 58370 73636550 ~ 73636988 (+) True G182155
TU206757 lncRNA downstream 128152 73706332 ~ 73766435 (+) True G182209
TU206778 lncRNA downstream 155233 73733413 ~ 73734816 (+) True LOC110495913
trnah-gug-2 mRNA upstream 1166 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571375.2 mRNA upstream 1807 73436134 ~ 73454862 (+) False malt3
XM_021571366.2 mRNA upstream 1807 73441465 ~ 73454862 (+) True malt3
XM_036955208.1 mRNA upstream 37831 73409112 ~ 73418838 (+) False slc28a1
XM_021571436.2 mRNA downstream 155215 73733395 ~ 73737729 (+) False LOC110495913
XM_021571480.2 mRNA downstream 178792 73756972 ~ 73768531 (+) True idh2
XM_021571519.2 mRNA downstream 305371 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA downstream 305376 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA downstream 313067 73891247 ~ 73984737 (+) False LOC110495946
TU206530 other upstream 114392 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 114392 73341707 ~ 73342277 (+) True G181995
TU205289 other upstream 1202942 72253438 ~ 72253727 (+) True LOC110533853
TU204899 other upstream 1391474 72059717 ~ 72065195 (+) False LOC110495604
TU206683 other downstream 28712 73606892 ~ 73610237 (+) True G182139
TU206688 other downstream 44356 73622536 ~ 73624518 (+) True G182144
TU208054 other downstream 951469 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 1133401 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 1307918 74886098 ~ 74886500 (+) True LOC110496116

Expression Profile