RNA id: XM_021571397.2


Basic Information

Item Value
RNA id XM_021571397.2
length 5322
RNA type mRNA
GC content 0.47
exon number 21
gene id blm
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73579896 ~ 73605873 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAACCAATGGAAAGCATTTAGTCAAAACGGCGCTAAAACACGTTAACAGACTTGACTCTTTGCCTTTGGTTgctgaatttatttatttttgtcaatTAGCTATAGCTAGGTAGACAACGTTTTATTTTATAGACCACGACAATAATACATCCACAGACTGCACAAGTGGTGTTTCGCGAAATAACAAGACTAGCCAGTTATTATGAATGCTAATGTTGAGACGCTAGCCTAGCTGATAATGTCCAGTCTTCCTCAAAATAATTTGAAGGAACAACTCGAGAGACATAGCAATGCTGCTCAGAGAAAACTGTCGTTGTCTAAACCAAAACCAGGGACATTTTGTTTCAAAAAGAAGTCCACATCAGGTATCACCAAGGTGGAAGTTCACACTAAGGTAAACAGCTCAAATGGTTTAACAAACAGGAGTGTCAATGTTCCTCATGATAATGCAGTAATTAAACCTCCTTTGACGTTTTCAACCAAGCCCGAAAGACCTCTCGCCAAAATCAACTTCTCCTCAGTCAATCCCAAAAGCAAGTATGAAGCCATCAGTCCCTTTTCGGGGAGGAAACCCATCCCAGCTGTGTCTGCTGCAAAGATTTCCCCTGCTTTGACCAAATCTGATAGCTTGATCACAGGTAGCAATGGCAGCAAACCCACAGGACTTGATAGCTCTTTTGGTATTCCCCTGGACGGATGGGATGATTTTGATGACTTTGAAACCCCTGCCAAGGGCAAAAGTACTCTACCAAGCCCAGGGATCTCAGGTAGGAGTGCCAAGGTGACACCTGTTTCCAGTGTTGAACAATTGGATACTAACACACACAGATCAGACAAATATGTCCCTCTACGAGCGCTGAATACAAAGACCAACAGCCGTCACAGAAATAAGTGTAGTCTTGATGGGACAGAACAATGTACTCTCACAATGGAGGACTCACAAGATGCTTCGGAGTCTGCCAGTACTGCTCCAAGTGACAATCCCATCCAGGATCCAGCAGAGTGGGAGCACTGGGAGGTGGAGGATTCTCCCATTAAAATGGTTAGAAGACGACCTTCTGCTTCTCAAGCCAAGTCTGTGCtgagtgacagtgaagatgagaaCATCACTGCACCCGGTCCAGTTGAAAAGATAGATCATCAAAGTAAATGGAATGAGACAGATGTCATAGACCTTGATGACAAGTCCGAGCTAGGTGGAGACCTAGATTTCATCCCCCCTTCCCCAAGTCCAGAGGATTTCAGTCATTCTACTTCTACAAAGGAAACAAGATTGAAGTCAGCTGGCTCTGCAGTCCGTAAAGACATCAGTCCTGAATCAACAAGAGGGTCAGTGTCGAGCCTGCAAAGAATGTCTGATGGTCCTCTGAAAGAAAGAAAAGTCACCAATCCAAAGTCTGAAGATCAGCTCTTGAGTATCATGGAGTCCATCTGTGCTCTGGTGGATTCCATCCCTGATCATGAACTATTAGGCCTGTCCTGTGGGACAGAGCTCTTACTGCAGCGGGCTCATAGGAAAAGGATAATTGCTGCTGGCAGCAGTGACACATCTTTAAGGACACAACAGCCAGACAGCACTGTCTTGGAATCCAGATTCAGTGAAAAGACTACTTTTTCCTTTGCTACTCCAAGTGTCATGTCTTCCACCACTTGCCTGCCCAAGGGTAAAGGAGATTCTTCCATGAAAGCCCTTCCCTTCAGGAGGTCCTCAGTCATATCTGTGGACTACGACAGTAGTGTTTTTGAGGACTCTGACTGTATGATCAATGTTCAGACTCCAGGCATCTCTTGGAGACCCAGCACTCAGGAAAATCCTATTTTCACTAGAGACAAGAAGAAAGCATCCACAACAGGCCAAAGTAATTGTGACTCTCCATCGAATTACAGTATCTTCAAAAAACAAATTGGTGATGTGGCTCAGTCAAATTTCTTCTTCTCACCGAAGAGCCCGGCAGCTGCTGTACAAATGACTGGGGAGAGCAGTACCCAAGCCTCTGTGGCACAAGCCCCAGTAGTTACGGAGCCAGACGATTTCTTCATTGATGACTTTGACATAGATGACTTCAATGATTCAGATATCCCTGATTACTTTGAACCCCCAAGCTCCTCAGCGTCAAGGCAGGACTCCAGTTCTATCTCTAAAGCGGTGCGTGAGGGAGGACCAAGTACATCAACATGGCAGAAGAAACcagctacaccagctcctgtGGCCAAGCCTCCTAAAATCACCTCTCCTGAGCCCACATACAGAAACCCTGCTCACGATCGCTTCAGAGGCTTCAACTTCCCCCACTGTCCAGAGATGATGAAGATTTTCCACAAGCGCTTTGGTCTCCATCAGTTCCGATTCAATCAGTTGGAAGCCATTAATGCTACGTTGTTAGGTGAAGACACATTTGTCCTGATGCCAACAGGAGGGGGTAAAAGTCTTTGCTACCAGCTGCcggcctgtgtgtgtgcaggagtcACTGTGGTCATCTCACCACTGAAATCACTCATTGTAGACCAGGTCCAGAAACTCACTACTCTGGATATTCCCGCCACAAGTTTGTCTGGTGAGAAGACTGACAGTGAAGCAGCCAGGATCTACTTGCAGCTGTCCAAGAAGGACCCCATAATTAAATTGCTCTATGCAACTCCTGAAAAGGTGTGTGCGAGTGGCAGGATGATCAGTGCCCTTCAGAACCTGTATGAGAGAGGTCTTCTAGCACGCTTTGTCATTGATGAGGCTCACTGCGTCAGTCAGTGGGGCCATGACTTCCGGCCAGACTATAAGCGGATGCACGAGCTGCGGCAGAAGTTCCCCAAAGTGCCGATCATGGCCCTGACCGCCACTGCCACCCCCCGCGTCCAGAAGGACATCCTCAATCAGTTGCAGATGACCCAGCCTCAGGTGTTTACCATGAGCTTCAACAGAAACAACCTCAAATATGCTGTGTTACCCAAGAAACCCAAGAAGGTAGATGAGGACTGCATTGACTGGATCAAGAAGAATTATCCACGTGATTCTGGCATTGTGTACTGCCTGTCCCGTAATGACTGTGACAACATGGCTGACAGTCTTCAGAGAGCTGGTATACTAGCGCTAGCCTACCATGCAGGCATCAATGACAAAGACAGAGAATATGTACAGACCAAATGGATCAATCAGGATGGCTGCCAGGTCATGTGTGCCACCATAGCCTTCGGCATGGGCATCGACAAGCCTGATGTGCGCTATGTGATCCACGCCAGTCTCCCCAAGTCAGTAGAGGGCTACTACCAGGAGTCAGGCAGAGCAGGCAGGGACGGAGAGATCTCTCACTGCATCCTCTTCTACTCCTACTCTGACGTCATCCGCATCAAGAGAATCCTCACCATGGACAAAGATGGAAACCACCATACTAAAGCCACTCACTTGAACAATCTGCACAGTATGGTACATTTCTGTGAGAACGTGATGGACTGCCGAAGGATACAGTTGCTGGCTTACTTTGGAGAGCACAAGTTCAACCCAGGCTTCTGCAAGGAACACCCTGATGTCATCTGTGACAACTGTGCCAGACCCAATCAATACAAAGCAAGAAACGTGACTGAAGATGTGAAGAAGATTGTGAGATTTGTCCAGGAGAATTGTGAAAAAGTTGGCTCCAGATACAGCAAATCTGCGAACCAAAACCGACTGACTCTGAACATGTTGGTGGACATCTTCTTGGGTGCTAAAACCGCCCGTGTCCAGTCAGGGATGTTTGCGATAGGAAAGGCTTACTCCAAACACAACGCTGACCGGCTTTTCAAGAAGCTGGTTCTGGATCACCTTCTGGTGGAGGACCTGTACATCACAGCCAACAGCCAGGCAGTGGCCTACATCTCTGCTGGACCCAAAGCGATCAATGTCCTCGGGGGACACATGCAGGTGGAGTTCTATGAGACCGAGAGTGCCTCTAGCATCAGGAAGCACAAAACTGCTGTGGCCAAGGATGTCTCCAAGAGCGAGGAGATGGTCCAGAAGTGTCTGCAGGAGCTCACTGATCTGTGCAAGAGGCTGGGCAAAGTCTTTGGCATTCACTATTACAACATCTTCTCCACTGCCACCCTGAAGATGATAGCCGAGACGCTGTCGGCCGACCCGGATGTGCTGCTGACGATTGATGGTGTGACGGAGGACAAACTGGAGAAGTATGGAGCAGATGTCATCGCGCTTCTGCAGAAATACTCTGAGTGGAAGCTACCTGtggaggAGCAGTCTGACACAACTGAAGGAAGCTCCACTATGGCATGGATAGACACAAGGAGAGGCCGCGGAGACGACGAGGAGGACTGTTATGAGGACGACGCTGGATCTTCCAGTTATTTCAACAGTAACAACGGCAGAGGAGCGAAAAGGAAAAAGGCTCCCGCCTTCAAGAAATCCAAAAAGAGAAAAGGATATACAAACTCCAACTCTAAAGGGAAGTACAGCAACAATGGGTCGTGGACAGGGTCCAACTCCAGAGGTGGATCTAAAGGCCGGGGGTCAGCAGCAGGACGTGCGTCAGCAGCAGGGCGGGGCTCTAGGCCTTCAGCAGCAGGCCCAGTGGGGAGGAGGCCCGGCTTTATGGCCCTCCCCACACCACAAACAAACAGCCGGCCATTCCTCAAACCAGCCTTCTCTGTACTGTAGGAGTATAACTCCTGGCCATACCTGGAGTCTAACAGAGGGATTTTGGAGTAGCAAGGAAACTCCTAGTTAGTAGAGGATTTGAGACTGGGGTTCAATTTGATTCCAATTTACTTGTAAATTATTTACTTGTTTCATTTTAACTGTTGCACGAatgtgtgtttctgtacagcgTCTTCAATAGTCTTAGTTTTTTTTTCACTGGATTATCACTGTTTGTTTGCTTCTTTAGCAGTATTTCTTATCCATTCTGATGTGAAGTTTTCCACTTTTAATAAAGGCTCATAAATTATTCCTAAATGTGATACTGCTTTAAACTGTTTTCTGGAAAAGGTAAACGTGGGAAATTGTGTTGATTTGTTTTGAACCACGCCCTTAATACTGTACTTCCATTTACCCAAAAGCATGGAATGTGTAATGTTCCCTGTAGATGGCACTATATAATCTGAGCTATAGAAAAAAGTGTAATTTGCATTGAACAGCCATAAACCACAAGAAGcccatttttaaatgtttattggCACCAGTTACAAGGGACTATCAGAGAAAAACAATATTGTATACTGTTTTGTACAGAAGGTTTTCTACAGTATAAACATGGGATTCAGAATGGATCTGAACAAGAACTGGATTTGGCACATTTGTATATTCATATTACGTAAATAAACAGCAACCTTcatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207434 lncRNA downstream 7860 73571600 ~ 73572036 (-) True G182831
TU207432 lncRNA downstream 9473 73570202 ~ 73570423 (-) True G182829
TU207429 lncRNA downstream 12390 73567009 ~ 73567506 (-) True G182826
TU207427 lncRNA downstream 14404 73565282 ~ 73565492 (-) True G182824
TU207424 lncRNA downstream 16718 73562932 ~ 73563178 (-) True G182821
TU207483 lncRNA upstream 63084 73668955 ~ 73669190 (-) True G182876
TU207488 lncRNA upstream 69508 73675379 ~ 73675604 (-) True G182881
TU207490 lncRNA upstream 71408 73677279 ~ 73677546 (-) True G182883
TU207510 lncRNA upstream 97894 73703765 ~ 73704092 (-) True G182903
TU207699 lncRNA upstream 375457 73981328 ~ 73987065 (-) True G183084
XM_021571322.2 mRNA downstream 139101 73418615 ~ 73440795 (-) True alpk3a
XM_036955163.1 mRNA downstream 194299 73378175 ~ 73385597 (-) False znf592
XM_036955169.1 mRNA downstream 194299 73378175 ~ 73385597 (-) False znf592
XM_036955180.1 mRNA downstream 194299 73378175 ~ 73385597 (-) True znf592
XM_021571293.2 mRNA downstream 194300 73378175 ~ 73385596 (-) False znf592
XM_021571425.2 mRNA upstream 1018 73606889 ~ 73610117 (-) True ctsh
XM_021571414.2 mRNA upstream 4403 73610274 ~ 73646136 (-) True rasgrf1
XM_021571454.2 mRNA upstream 133311 73739182 ~ 73749958 (-) True si:ch211-107o10.3
XM_021571468.2 mRNA upstream 162713 73768584 ~ 73775448 (-) False LOC110495933
XM_036955327.1 mRNA upstream 162713 73768584 ~ 73775448 (-) False LOC110495933
TU207306 other downstream 234049 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 501517 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 513172 73027384 ~ 73066724 (-) False G182494
TU207071 other downstream 518583 73056242 ~ 73061313 (-) False G182494
TU206204 other downstream 706151 72872744 ~ 72873745 (-) True c2cd4a
TU207489 other upstream 70341 73676212 ~ 73676423 (-) True G182882
TU207716 other upstream 387207 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 501012 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 1125001 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 2000356 75606227 ~ 75606648 (-) True LOC110496186

Expression Profile