RNA id: XM_021571436.2


Basic Information

Item Value
RNA id XM_021571436.2
length 2990
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110495913
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73733395 ~ 73737729 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGACTGATCTATTGCGTTTCCATAACAAAAGCGACCAACATGATGCGCTATGGTGCAAGAGCTCTTAACCTAAACTAGGACAGTATTTGAGAACCTCCGATTAAATTCAGGGACTATAACGAAGAACCATTTGGAAACTTTTATTTTCATTATGTTTCAGGGTAGGTAATGACAAAACATTGGGTGCACCTTTGAATATGACAAGCCTGGATCAGGGCTGCAGGTTGTGACTGCCTTTCACCACTGAGGGAGGGCGCTATCTGTGGTTGTCTTGGAGATGATGGCAGACATACTGGAGCTGCGGACAGACGGGAATTCGCTTCTGAAAGCGGTATGGCTCCGACGCCTGCGGCTCACCAGGCTCCTGCTTGAGGGGGGTGCCTATATTAATGAGAGCAACGAGCGAGGAGAGACACCGCTCATGGTGGCCTGCATGTCCAAACACAGCGACCCGCAGAGTGTCAGCAAGGCAAAGCTGGTCAAGTATCTGCTGGATAATAAGGCTGACCCTAACATCCAGGACAAAGCAGGCCGGACAGCCCTGATGCACGCCTGTAGCCAGAGGGCGGGGCATGAGGTGGTGTCCCACCTGTTGACCAATGGGGCTGACCCAAGTCTTGAAGACAGGAGCGGGGCTTCTGCTTTGGTCTATGCAGTCAATGTCGATGATAAGGAGACCCTAAAGGTTCTCCTAGATGCATGTAAGGCCAAGGGCAAAGAAGTAATCATTATCACCACAGACAAGTCACCCTCTGGCACCAAAACCACCAAGCAGTACCTTAATGTCCCCCCTTCCCCAGAGCTAGAGGATAGGTGCTCCCCTGCATTCTGCACCACTCCCTCTGACATTGAGCTCAACACCTCCCCCTCACCTAACTCAGCCGAGCAGCACAACACTATCTTCAGTTTCCAGACAAAGTTGAAAACATCATCCAGCACAGCAGCAAAGCTTCCCAATGGGCCAACCTCTCCCACACGGCGACCAGCCAACCCCAAGCGTGCTCGTTTACCCCAGCTGAAGCGTCTGCAGTCAGAGCCGTGGGGGCTGATCGCTCCCTCCGTCCTGGCTGCAGCTGCGGCCCACGAGGAGTGTAAGAGAGCCACCTCTGAGGAGGTCGTCACAGGCGTCAATGGACTTGCTCTGTCCAAGAGATCGACTATGTCTCGACAAAACAGTGTGGATGGCAAGGATGTGTTGTTCCCACAAATGTCATCCTCATTGTCTGTCCCTCTAACTTCCAAATCGGCCTATGAGAGGTCTCTGTGTCAGCACCAGCCCCTGGCCCGGCGTAGCACCGTCCCTGCAGACCaggacagtagcagcaacagtgtGCCAGCTAGCTTGAGAGACCCGGTCTACAGGAGACGGCTGGGCACTGACCACTATGACTCAGACTCCCAGCTGTACTCAGACTCTGGCATGCTGGACTCTCCTAAGGTTCCTCTAGAGAGGAGGAAACTCAACACGTCTCCATTAGCCATGCTGACCAGCTCCAGGGAGTCCCTAGACAGCAATGCCAGCACGTCATCACCTAGCACAGCACGTCGCCGCGCACCAGGCCTCTTGGAGAGGCGAGGCTCGGGGACTCTGCTGCTGGACTACATTTCCCATACCCGGCCTGGCCATCTACCCCCACTGAACGTCAACCCCAACCCTCCTATCCCAGACATCGGAGCCAGCAGCAAGCCCTCATCCCCTCTTGCCTCAGGTTTCATATCAGTAGCTCCAGTAGCACCAAACTCACCAAAGAGAGGCCAGCTCAAGTCAAAAAAAAAACTTGTAAGGAGGCACTCTATGCAAGTGGAGCAAATGAAGCAGCTCTCTGCTTTTGAGGAGCTGTAGTGGACTCATTGTTTGTAGATGTAGCAATGTTAATATAAAATAAGGCTAACATTTCTAAAGGAAATTTTGTTGATTGGAATTTCAACTTTTCCTCTTAGAAAACCAGTGGAACATGGATATAACTTGCTTACCAGTATAAAGTTGTAAATGTTATGGATGCTCTTAGAATATTAGCACCACCTATTAAACGTTACAGGTTAGACACTAGCAACATCTAAAGCATGGCTCTCCTAACCgtgttcctgaagagctaccctcctgtaggattTCGCTAAACTGATTCCGTGTATCAactagctaattattagaatcaggtgcgctaaATTAGAGTTAGAGCAAaaaggacggtagctctccaggaacagggttggctgagagatttttttaaaagtatttgaAAATCATACAAATTATTTGATCATAAGTTTATGAAAAATAATCCTCGTCGGCACCTCAAATCCTTTAGATGTGCAATCCTaagaacacatacagtaggaggtACGTGTGTAGCCAACAAGTCATCTGGTTGTATAGAATGTTGTTATTAGTGCAACAGGCCTCTTGTTGTAGCTTTAGTATTAAATTGAGGTTGATTGTTTTGTAGCAAACTTGTACACAGTGCCTTCCAGACAAATTATCGGAAAAGAGGGTGGATCAAAAAGTAATTTATCGTTCATAATGCAACCACAAGATGTTTTGTTTTAGTGCCGTTGGTGTAAAGCCCAATATGAAAGGCTCAGAGTATAAACAAACCATGTATGACTTATATGCCTTAGCTAAATACAATTTAAGAGATTACGTAAATCAGCACTTTATTATGGTAGGTTTTAAATTACCCAAGAGAAAAATGTACGTTGTTTCTCTAAATGTTTTGTAGATATAGCACATGTATGTTCATGCATCAGTTCCATGACAAGACAACATAATGTGTATACTACAAACGTACGTAAATACAGGCTTAGTGAACCTTGTTCCCCTAGAATAGAATTTACACTTATGGCAAAGTAAAAGTTCATACAGCTTCCATGTAACTTAACTATGAGACATTCATTCTGTTTAAAAGGCTCACGTTAACATATTTCGATGCATAGTATTTTTGTATGTAGTTTGCTGTGTATTCTAAATAAATGTCTCTAAAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206700 lncRNA upstream 96407 73636550 ~ 73636988 (+) True G182155
TU206699 lncRNA upstream 97302 73635627 ~ 73636093 (+) True G182154
TU206576 lncRNA upstream 145730 73587104 ~ 73587665 (+) True G182037
TU206665 lncRNA upstream 159474 73573605 ~ 73573921 (+) True G182124
TU206558 lncRNA upstream 318674 73413662 ~ 73414721 (+) True G182020
TU206891 lncRNA downstream 145831 73883560 ~ 73937132 (+) False LOC110495946
TU206895 lncRNA downstream 225263 73962992 ~ 73963709 (+) True LOC110495946
TU207704 lncRNA downstream 252808 73990537 ~ 73991061 (+) True G183089
TU207706 lncRNA downstream 253636 73991365 ~ 73991640 (+) True G183091
TU207719 lncRNA downstream 257426 73995155 ~ 73995604 (+) True G183099
XM_036955241.1 mRNA upstream 155215 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 155216 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 277892 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571375.2 mRNA upstream 278533 73436134 ~ 73454862 (+) False malt3
XM_021571366.2 mRNA upstream 278533 73441465 ~ 73454862 (+) True malt3
XM_021571480.2 mRNA downstream 19243 73756972 ~ 73768531 (+) True idh2
XM_021571519.2 mRNA downstream 145822 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA downstream 145827 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA downstream 153518 73891247 ~ 73984737 (+) False LOC110495946
XM_021571509.2 mRNA downstream 153518 73891247 ~ 73984737 (+) False LOC110495946
TU206688 other upstream 108877 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 123158 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 153320 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 391118 73341380 ~ 73342277 (+) False G181995
TU206531 other upstream 391118 73341707 ~ 73342277 (+) True G181995
TU208054 other downstream 791920 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 973852 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 1148369 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1299523 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1348893 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile