RNA id: XM_021571480.2


Basic Information

Item Value
RNA id XM_021571480.2
length 1823
RNA type mRNA
GC content 0.49
exon number 11
gene id idh2
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73756972 ~ 73768531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAATCATAAATACCCAATGCGGATTGGGATGGTTAGTTAGaagtccctccctcctctattgtCTTTGACTGTGTGACGTAACGTCAAGCGTGGGTGGGGTGGTGCTGACTATATTGCAGTGAGCGGGGGTTCATTTCGGCCCTTCTTTGCTCGGAGTTTCACGGTTATTAAGCTGCAAGTAATTTAGGCAAATCATGGCTGGGTACTTGAAggtcctccgctctctctctagGTCGGCGACCACTCTCTCCAAAAACCCCGCTGTGCTCGCGCCAGCTGCAACCTCCCAGAGTTTGCAACAGAGGAATTATGGGGACAAACGTATCAAGGTGTCCCAGCCTGTGGTGGAAATGGACGGAGATGAGATGACTAGGATCATCTGGGAGTTCATCAAAGAGAAGCTTATCCTCTCCAACGTGGATGTGGAGCTGATGTACTACGACCTGGGTCTGCCATACCGTGATCAGACTGATGACCAGGTCACCATCGACTCTGCCATCGCCACCCAGAAGTACCATGTCGCTGTTAAATGTGCCACAATCACTCCCGATGAGCAAAGAGTAGAAGAGTTCAAACTGAAGAAGATGTGGAAGAGTCCCAACGGAACCATCAGGAACATCCTAGGTGGCACAGTCTTCCGTGAGCCAATCATCTGCAAGAACATTCCCAGGCTTGTTCCAGGTTGGACACAGCCCATCACCATTGGCAGACATGCCTTTGGTGACCAGtacagagctacagACTTTGTTATCAGCCAGCCAGGCACATTCAAGATGGTCTTCTCCCCTACTGATGGGAGCAAAGGCCAGGAGTGGGAGGTCTACAAGTTTCCTGGCGGTGGCTGTGGAATGGGCATGTACAACACAGATGAGTCTATTTCAGGCTTTGCGCACAGCTGCTTTCAGTACGCCATTGGCAAGAAGTGGCCCCTCTACCTAAGTACCAAGAACACCATTCTCAAAGCCTACGATGGTAGATTCAAGGACATCTTTGAGGAAATCTACCAGGCGAATTACAAACCAGAGTTTGACAAGCTGAAGATCTGGTACGAGCACAGGCTCATTGATGACATGGTTGCCCAGGTGCTGAAGTCTGATGGTGCCTTTGTGTGGGCCTGCAAGAACTACGATGGAGACGTACAGTCTGACATCCTGGCTCAGGGTTTCGGCTCTCTGGGTCTGATGACGTCAGTGCTGGTGTGTCCCGATGGCAAGACTATTGAGGCAGAGGCAGCCCATGGCACAGTGACCAGGCACTACCGCGAGCACCAAAAGGGAAACCCAACAAGCACCAACCCCATTGCCAGCATCTTTGCTTGGACCAGAGGGCTTGAGCACCGGGGTAAACTTGATGGCAACCCTGACCTGATCAAGTTCGCTCTGACTCTGGAGCGGGTGTGTGTGGAGACTGTTGAGAGTGGCGTTATGACTAAGGACCTCGCTGGCTGCATTCACGGCCTTTCCAAATGCAAGCTGAATGAACACTACGTCAACACTGAGGACTTCCTGGACGCCATCAAGAATAACCTGGACAGAGCCCTGGGCAAGTGAAGGACTGAAGAGTGCAACTAGCCTGAATGTGACATTGTCCTGTTTTTGTACCTAATTGTTAACTTCGGTCATACATGCATATTGTCTGAAGAAAGAAGTAATATGTAGTGTGTCAGATTGTACTGTTGATCTGTTCCATCTAGCACTCCTGTCCCTATTTCCAGGGTTCTATTTTTGTAAAGAAGTACTATATTCCGATACTGTATTATGCCTTCAAAGCAACATGAAGGCCATGTCAAGAATATTTGCTAATACATCTTGTTTGATCTTA

Function

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006102 isocitrate metabolic process biological_process
GO:0051287 NAD binding molecular_function
GO:0004450 isocitrate dehydrogenase (NADP+) activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K00031 IDH1, IDH2, icd; isocitrate dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206778 lncRNA upstream 22156 73733413 ~ 73734816 (+) True LOC110495913
TU206700 lncRNA upstream 119984 73636550 ~ 73636988 (+) True G182155
TU206699 lncRNA upstream 120879 73635627 ~ 73636093 (+) True G182154
TU206576 lncRNA upstream 169307 73587104 ~ 73587665 (+) True G182037
TU206665 lncRNA upstream 183051 73573605 ~ 73573921 (+) True G182124
TU206891 lncRNA downstream 115029 73883560 ~ 73937132 (+) False LOC110495946
TU206895 lncRNA downstream 194461 73962992 ~ 73963709 (+) True LOC110495946
TU207704 lncRNA downstream 222006 73990537 ~ 73991061 (+) True G183089
TU207706 lncRNA downstream 222834 73991365 ~ 73991640 (+) True G183091
TU207719 lncRNA downstream 226624 73995155 ~ 73995604 (+) True G183099
XM_021571436.2 mRNA upstream 19243 73733395 ~ 73737729 (+) False LOC110495913
XM_036955241.1 mRNA upstream 178792 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 178793 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 301469 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571375.2 mRNA upstream 302110 73436134 ~ 73454862 (+) False malt3
XM_021571519.2 mRNA downstream 115020 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA downstream 115025 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA downstream 122716 73891247 ~ 73984737 (+) False LOC110495946
XM_021571509.2 mRNA downstream 122716 73891247 ~ 73984737 (+) False LOC110495946
XM_021571532.2 mRNA downstream 230738 73999269 ~ 74010559 (+) True LOC110495967
TU206688 other upstream 132454 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 146735 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 176897 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 414695 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 761118 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 943050 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 1117567 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1268721 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1318091 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile