RNA id: XM_036955350.1



Basic Information


Item Value
RNA id XM_036955350.1
length 3567
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110495933
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73768584 ~ 73775448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCTCCCACAGATATAAATAGGAGCTGGATTTTTTTACTCCACTCAGTTCTCCTGAAGGATGAGATCCCTGAAACACCTCAAACATCACACCAGGAACAATGTGgaggaggagagtggcCGTCTGGTGCGGTGCTACCCCAAGGTGATGGAAGGCCAGGTGGATgcaggaacacagacagatcCCGTGGTGGTGCTGTCTCTAGCCCAGGCTGCTGTCCTGGGCCTCATCTCCCAGAATGAGATCTTTGGAGCCACCATCGCCCCCAATGGCTTCTACATGGGCGAGCCCAGGGAGTATGGCAGGACCCCTCCTCCTCCAGAGGGCATGGAGTATGAGTACGCTGACCAGCTGATTGGGGCCAACGGGGACTACCTGGCTGAGCCTGTAGGGGAGTCGGAGCCCCACAGGAATGAGAGGAGGCGCCCCGGGCCCAGAGGGAGAACCAGGGGGCCCAGGAATGAAGGAGGAGCGCCAGGGGAGCATCACAAAGTCCCCAGCGTACAGACTCAGGtcaaaggggagaggggagagtctGAAACCCCTCCGTCCTGCATCCATATGGCAAAGAGCCCTAGCAGCCCAGGCAAGATGGAGGAGCCAGCCACTCACAGAGGGCCTCTGAAGGAGGAGCAGAGCTGTGGtaactgtgctgtgtgtgtgagagagacgtcCAGTCAGACCAAGACAGACACTcggccagaggagaggagagggggaggaggagaggggcaaGAAGAGGAGTTAGCTGAGGAGGACGGAGTGTTGAACCTCAAGACTGGAGGAGATAGGGGAGACAGTCCCAATCCCATCATGAACCACTACTTTGAGTCCAGCGAGGTGGCCTATGAGTCTGCTGACGTGGCCGTGGGGGACTATGACGAGAGCAGCCAGGGCATGCTGTGGGCTGCAGACGCCGAGGGGATAGCCAGGCGCATGCAGATCGACCGGCTGGACATCAACGTCCAGATAGATGAGTCCTACTGCGTGGATGTGGGAGAGGGCCTGAAGAGATGGAAGTGCCGCATGTGTGAGAAGTCTTATACCTCCAAGTACAACCTGGTCACCCACATCCTGGGCCACAATGGCATCAAGCCCCACGAGTGCCTGCACTGTGGCAAGCTGTTCAAGCAGCCCAGCCAcctccagacccacctgctcacccACCAGGGCACCCGGCCACACAAGTGCACCGTGTGTAAGAAGGCCTTCACCCAGACCAGCCACCTGAAGAGGCACATGCTGCAGCACTCCGACATCAAGCCTTACAGCTGCCGCTTCTGTGGGCGAGGCTTCGCCTACCCCAGTGAGCTCCGGTCCCACGAGAACAAGCACGAGAACGGCCACTGCCACTTGTGTTCCCAGTGTGGTATGGAGTTCCCCACCCACGCCCACCTGAAGCGCCACCAGACCAGCCACCAGGGCCCCACCACTTACCAGTGTACCGAGTGCAACAAGTCCTTTGCCTACCGCAGCCAGCTGCAGAACCACCTCATGAAGCACCAGAACGTAAGGCCCTACGTCTGCCCCGAGTGTGGCATGGAGTTTGTCCAGATCCATCACCTCAAGCAGCATGCCCTCACTCATAAGGGTATGAAAGAATTCAAATGTGAGGTGTGTGCCCGGGAGTTCACCCTCTCTGCTAACCTCAAGAGACACATGCTGATCCACGCCAGCATCAGGCCCTTCCAGTGTCACGTCTGCTTCAAGACCTTCATCCAGAAACAGACCCTCAAAACACACATGATCGTCCACCTGCCTGTCAAACCTTTCAAGTGCAAGAATGTACAACCTCCTGGGCCACATGCACCTCCACGCTGGCAGCAAGCCCTTCAAGTGTCCTTACTGCTCCAGCAAGTTCAACCTGAAGGGCAATCTGAGCCGACACATGAAGGTCAAACACGGCGTCCTGGATGCTTCACCAGACGGACGAGAAGCCCCCCCTGACATAGAGAACCAGGAGGACTACGATGAAGAGAACCTTGAATTCAGCGAACGAGAGAACCTGGCCAGTATCAACACACCAGACATCGCTAAACTGTCTGAATTGGAGTATTATAGCAGCTACACCAAGGGTCCAGGGCGCTACAACACAGCATGAATGATGACAAAAGACTCCATATTGAGTAGAAGTGTAAACTAAAAGGGAGGTAGTGCCGCTAGCAGTTTAAAGTGGTGGAATCTGCCCATTCATATGCACTGGAATCTCAATTTTCTTGCTCTGATATTCATTGGGAGTGAGAGACAGGTCATTTGGGATTGTACATTTCTCATCGGCATCTTGTTTTGTATTGAAACGTGACTTCACCTCTAGGTGCCACAACATTGTGATTGATGTGTTCACGTGAAAAAGGTCATATCTGAAAATAAATCATCTAACCTCCTGGGAGAGTCCTACTCAACATACATCCCCAGGGGTGGCCTAACTCTGTAAGCACACGTTTTAGGGAAACAAATATGTGATAGTGAAATGCACTTACTCAGACAATCCCGAGCAAGTTTGCGGATAAGTCAGAATACAGCTGAGTATTATTGCTTTTACTAACATGTCTAGAAATGCATACAGGCCTGTCAAATGTGTCCTCTGTTCATGTCCCTTACCAAAGCTGATACCGTTCAAAGCAGTTCATGTGAaccaaccattttttttttttttacttcccaGGTTAACATTTTATACTGTGAGTAGTTTCAACTACAGTTCTAGGATTGTAATATTTGCAATGTGCAGAAATAAATCCGTTGCCCAGTGTCAGACGCTAATATTGCTCATGCCATCAATTTATAGCCCCATGTGACCAGCTTGATTAAGTTCTTGCATTGTCACTTTTGTCCCCAGTCAAATAAGTGTATTGATGCAGACCACATCTTATCTTAGTGTGCTAAAAGCAAAATAAATTATATTGCCCCTCCGATGTAGTCACCAAAGAATCTGACCAAATCTGGGCCATATTGCCAAACACAATAGCAGTCTAGTGACACCCTTTCTCTGCATTGTAGAGCTTGAGTTCATGTTTCCCAATAGACTTTGGGCTTTATCCTCCCCAAAGTATATTTAAAAAGGATTACCATGAAGACACTAGTGCAGTTTCATTTTTCATGATACGTCACAATTTATGCCCCCATGCAAGCCTTTATGGGACAGATCTCAAAAGCAAATGCAGCCCCTGCATACGCATGGTGGTTTTGGTTCAGGGCGGAGTCTCAACAGGAACGGTCCTAAAACTTTGGACAGAAATGAAGTGCCCTGGAGTGTGCTATCCATCATGCTGCACACTGGTCTAAAGTGATGAACGACAACTCCCAACATGACAGGGCCACAGACCCAGCTGAACATTTGGGAAATTCACTATATTTTTTTCCCTGCTTAATTTTACAGACATCACCTGCATCACCTTAATAAACAAAATGCAAATTTGAGAGAACTAtttagagggggaaaaaaaaaaatagctgGAACTTGAATGGCTTTCTGTGTTACACATTGGTGTGGAAATATCCTGTTGCTAGAACTATGTAAAATGTGTGCCAGACAATACTGTAAAATAATAAATTTAtttacctttaaa

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207510 lncRNA downstream 64492 73703765 ~ 73704092 (-) True G182903
TU207490 lncRNA downstream 91038 73677279 ~ 73677546 (-) True G182883
TU207488 lncRNA downstream 92980 73675379 ~ 73675604 (-) True G182881
TU207483 lncRNA downstream 99394 73668955 ~ 73669190 (-) True G182876
TU207448 lncRNA downstream 136848 73600852 ~ 73631736 (-) True G182841
TU207699 lncRNA upstream 205880 73981328 ~ 73987065 (-) True G183084
TU207707 lncRNA upstream 215892 73991340 ~ 73991675 (-) False G183092
TU207711 lncRNA upstream 215932 73991380 ~ 73991675 (-) False G183092
TU207708 lncRNA upstream 215983 73991431 ~ 73991675 (-) True G183092
TU207718 lncRNA upstream 219273 73994721 ~ 73995001 (-) True G183098
XM_021571454.2 mRNA downstream 18626 73739182 ~ 73749958 (-) True si:ch211-107o10.3
XM_021571414.2 mRNA downstream 122448 73610274 ~ 73646136 (-) True rasgrf1
XM_021571425.2 mRNA downstream 158467 73606889 ~ 73610117 (-) True ctsh
XM_021571402.2 mRNA downstream 162711 73579896 ~ 73605873 (-) True blm
XM_021571397.2 mRNA downstream 162713 73579896 ~ 73605871 (-) False blm
XM_021571550.2 mRNA upstream 235054 74010502 ~ 74014413 (-) False LOC110495977
XM_021571562.2 mRNA upstream 243071 74018519 ~ 74067110 (-) True LOC110495986
LOC110501884 mRNA upstream 336530 74111978 ~ 74112847 (-) True LOC110501884
XR_005037845.1 mRNA upstream 343618 74119066 ~ 74140876 (-) False LOC118941541
XM_036955467.1 mRNA upstream 346835 74122283 ~ 74125960 (-) False LOC110496007
TU207489 other downstream 92161 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 422737 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 690205 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 701860 73027384 ~ 73066724 (-) False G182494
TU207716 other upstream 217630 73993078 ~ 73993545 (-) True G183096
TU208238 other upstream 331435 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 955424 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1830779 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 2101911 75877359 ~ 75878060 (-) True G186002

Expression Profile