RNA id: XM_021571494.2


Basic Information

Item Value
RNA id XM_021571494.2
length 5943
RNA type mRNA
GC content 0.48
exon number 16
gene id LOC110495946
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73883551 ~ 73984737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGGTGTcagactgttagagagagagagagaaagcagacagacacagagcaggCAGCGGGAGCCCTTTAACTACTGCTACTCTAACTGCTCTACGTGGATAATCTACTGGCTGTTCTATTACCCATTCCCTGAAGGGCATTTCTATCTGAGTCACCCTAAAAGGAACTTTTTCTTCATCTGAAGATCATTTTGGTACAGAGCTGTGCAGGAAAGAGATATAGGCAGAGCCCTTCTTGGATCCGCCTTTGACGTTCGATACACGGGAGAGGAGCATGGCCCAACTGCATGTGCTCTGAAAGACTCAGACGGGATCATGGAGAGAGAAGGTTTGGTGTTCCTGGGTGGCAGAGATCTTCAGCGGTCGGCGATGAGGTGGTCGATGGAGATGGACAGACGAATGTATGGATTTAAATCCTGAAGGTCacctctacaggccagctccgcCTGAAGTTCCCTGTTGAGCCCTCATCGGTAGATGATCTCAGCTGAGCCCCTGGGGTGGTTTGAGTGCATCGAGGCTGATTGGAGGCGGCTGTCCATCCTGGAAGGCTCGTTGTGAGGTGAAATGTCATCAGTCCAAGCCCAGAGTCATCTGTAGCCCCAGAGGAGCTGCCCGGCTTCACTTTTACAACAGAGCACCAGTCTCCCATTCAGGGAGCCCAGAcctacaggaagagagggagaggaaatatACACAGGGGAGAAGAAGACACTCTTCATGAATTCCCTAAAATCGTGAAAGACAAACCGTATGAGTTGGCTGGCAGTCGTGAGGAGAGGAGCTATGTGGACAATAAGCATGGCCCAGCTCTGTCTCCCGGCATTCCTTCTCCTACTGGCCTACGCCTTTGTCCAAGCAGCTGCCACCGAGGACGATGTCACTCCACGACTCAGCTTCACTTACAATGCAAATGAGAGGTCAGCCAAGAGATTCTCTGTGGATGGGGTCTTCAATTATACCTCTCTGCTCCTCAGTAAGGAAGATAACATGCTCTATGTTGGAGCACGAGAGGAGCTCTTCGCCCTCAACCTCTCTGATATCAGCAGAGTCCAGCTACAACGTAATcTGACATGGAGCACtcatgagaggaagagagatgagtgCAGTTTCAAGGGCAAAGACCTACAGACTGATTGCTTCAATTACATCAAGATTTTACTGCGTGTGAACAGTACCCATCTATACGTGTGTGGAACCTACGCCTTCAGTCCAATCTGTGCATACATAAACACAGCTGACTTCACTCTGGTGAGGAGCCAGACTGGGGAGATAGTGACAGAGGATGGACGCGGCCGCTGCCCTTTCAACCCTGAGTACAAGTCCACTGCCATCATGGCTGATGGAGAGCTGTATGCTGGGACGGTCAGTAATTTCCAAGGAAATGAACCTATTATTTACAAGAGCCTGGGCCAAGGCGCTGCCCTAAAAACAGAAAACTCCTTGAACTGGCTTCAGGACCCAGCCTTTGTGGGCTCTGCCTACATTCAGGAGAGCCTGCCCAACGGCAACCCGGTGGGCGACGACGATAAGATTTACTTCTTCTTCAGCGAAGCGGGAAAGGAGTTTGAATTCTTTGACAACACCATTGTATCGCGCATCGCTCGCGTGTGTAAGGGTgacaaaggaggagagagggtgctGCAGAAGAAATGGACCACCTTCCTTAAAGCCCAGCTCCTGTGTTCACTGCCTGATGATGGCTTCCCCTTCAACATCATCCAGGACATGTTTGTGTTGACACCCAGCCCAGAAGACTGGAAGAACACTGTGTTCTACGGGGTCTTTACTTCACAGTGgtataAAGGGGCCTCTGGCAGCTCAGCAGTGTGTGCCTTCACCATGGACCAGGTGGAGAGGGCCTTCAGCGGCCGTTACCGTGAGGTCAACCGGGAGACCCAGCAGTGGTACACCTACAACCACCCTATCCTTGATCCACGGCCTGGAGCGTGCATCACTAACGCAGCCCGGGACCagggcatctcctcctctctgcatATGCCTGACAAGGTACTGAACTTCGTCAAGGACCACTTCCTGATGGACAGTGTGATCCGCAGCCAGCCCCTCCTGCTGAAACGCAGCGTCCGCTACACCCAGATAGCTGTCCACCGGGTCCAGGCCATCAACAAACACTACAATGTGCTCTTCATTGgaacagATGATGGAAGACTCCACAAAGCCATTAATGTCAACAATAAGATGCACATCATTGAAGAGATTATGCTTTTCACTGACCCCCAGCCTGTACAGCACATTGAACTGGACTCTGAAAAGGGCCTGCTGTTTGTGTCCTCCTACTCTGGCCTGGTGGAGGTCCCGGTGGCTAACTGCTCCAACTACCAGAGCTGTGGAGAGTGTGTCCTGTCCAGAGACCCTTACTGTGCCTGGGAAGGGCGGCAGTGTCTGAATGTCAGGCTGGGTGGACTAGATAACCACTGGCAGCAGGACGTGGACGAGGCAGACACATCCGTTATCTGCAACAAGACACAGCCCAGCCCTCGCTTTGCTAAACCCCCATCCACACGGATGTCTTCATGCCAGGTGATAATGATCCCAGCCAACATGTTCAAAGTGCTGCCCTGTAAGCTGCGCTCCAACCTGGCTGAGAGGAAGTGGGAGTACAGTGAGGGTGCAGGTCACTTCCTGTACCCCAGTCCTGAGGGAGGTCTAGTGGTGGTGGCCCAGGCTGACAGACAGGAGACCTATGAGTGCTGGTCAGTGGAGGAGGGCTTCAGGCAACTCCTGGCCAACTACTGTGTTAGGGGAGAGGCCAGGCAGGAGAGCACCACCCTCATTGGCCGCTCACGCACCCCTCTGGTCCCACAGGAGGAGCCAATCATCCTACCTGGAGAGACCCGCTCCCCACAGATCAACACCAAGACCTACTGGAACGAGCTCATCATAGTGTGTGCCCTGCTGGGCTTCTCCCTGGTGGTGTTCTCCCTATTTGCGGTCTACAGGAACCACGACCGCATGAAGTCCATGCTGAAGGAAGGCGAGTGCCCCAATATGCAGCAGAAGAAACCCAGGCTAGTGGGGAATCCGGCAGAGAACTTGCCTCTGAATGGCAACAGCACAGTGCCAGCCTCTGTGTCAGACCACAAGGGTTACCAGACCCTCAATGACAACTACATCTGCAACACACCGCCACATGAGTGCTCATCACCAGACAACAGCAAGAGCTTCTCCGAGTCAGAAAAGAGGCCTCTGAACTTGAAGGAGAGCACTGTAGAGATCTCGCCCATCTGCCCGCGGCCTCGGGTGAGACTGGGCTCAGAGATCAAAGATTCCATTGTGTGAGGACAGCTTTGATCAACTTGAGCAGGAGATAAAACCCTAATGTGGAGTGATTAACTATTAGCCATAAGAAAAGGGGGActtacaataaaataaaaaccataGAAGGAAGGAACACTGAAGAGGGACATTTCATTACACTGCTTTTGCACTTTTGTCTTTTTCATTTTGTCCCTGTGGTCAGTTCTCATTTCCTTGTTGTCACTCCTCTTTCTCTAGTGCACCTGAAGCACAATGAAGAGGAAGCTGATACAGATTGCCTTCAGACTATTGAAGCTGTGGAATGATGGTTATGGTGGACATAGGACACATACAGCTGATTTTGTCCTTCTGTAACAGTTTTTATATGATTCAGTCATGTTGTTTTTATGCATTGCCACTCAGTCCGTCCAAATGTTCTGTTGGCATTGCATTGAAAGTAGAGAGATACTCTATGGGTCCACAGCTGACCCTTAACGCTCCCATCTACATCCACAATTAGTGTGCGCTTAGCCCTACACTGAGAATGATAGTAGAATAACAAACAACCTCTAATTCAAACACTATAGTAAGTAGATCAATAGGCCTTTCACTGATGACTTAGTTATAACAGCAGTCTATCAGCTATTAATTCAAAGCAGTTTAAACTGTGGATGACCTTAGTGCAGCATAACCAGGCAGACATTAGAATGGAATCCACTGGTCAAGAGAGGGCTGACCATCCCAGAGAGACATGGAAAGGAACCAATGAGGAAGGAATGAAAGAGGTAGGGACCACCTGGCATGAGGTGTGGAAAAAGAGCACACAACAGAATAAAATAATACTGGAGAGGTGTTGTTGTCGAggttctctgctctgctccatcaGGAGCTTAGAGATTAAGTCAAGACTTGAATGACTAACATGTATTGTGAAGGAGTACAGAGAGAAAGCAACACTATCCCCCCAAATGGAGAGTAGCACAGATGGGGTTTGTACGTCCAAAGGTATTGGAGGATATGgtgcctaacatgctgaccagaccggacacgtcgcgtgtgtgagcgttgcaaaataaattgacacatatgttattcaatcatggcacccacactgctcgctgGTATCAGCGAGCGTCTGCTTGGTCAGGCGGTAAAATAGAAATTGGTGCTATTTGTGACACCTCAACGCGCTGCAAGTccagcctctcccatctcctcattggtttttaggagcatatacccacatgccaactcctcattggtttttagaagcatatacccacatgccatctcctcataggtttttagaagcatatatccacgtgggtgattgaaagattaacTTAGGTCTACACTCCGGTAGGTTGTAGTAATGCActgtaaagttggttgccaaccgccatattaCATCCAaaataagaagaagaagcctgagaaaggaggagagatgacgagaAAGGAATTCAGTTtaccgttttatctgtggattaattgtggGAGTAGAGGACATTGTGCATTTAATCTAAAATAACAAactaatgtttatatcccaggacaaattagctagcaacagcaagctagctagttaaattgacataaatgtttcatgcttttcaacctgtccccaaattaatataattggttcagagtttgttttgatatttcaacctgcgtgtcctgatcgcttctggtgtgggtgaacaaaatCAACGTGCGTGCGtccggtttggtcagcatgtaagtTATGTGTACGATTGACATTCACAGGGTTGAAGCGTACCCCTGACATTGGGGAAGACCCGAGACCAGGTATTAACATATGATTCATTATGGAGCCAACAGATTATGCAAAGCAAGGTGCAAGGTCACACCAAAAGAGAATCTCATCTTGAGACTGTGCAGGCGCATAGGTGTCCACACAATCTTGATTATTGAGAATCAGAGGCATTATACCCACATATAATTTAGTGTGCAAAAGATTGAGGCCTTTCTGTGGCATAGCGgaatgggatgagagagagcttATCACTAGGCCTGGAGTTGCTGTAGCTAGGCTGAGATCCCGGTATAAAATGCTGACTAGTTCAGTTTGTCAGTCAGAAACTGATTCCTTCGATCCAAATTCAGTCACTTCAGACACCAAGTTAATGTGGGCTGAGACTGTGTAAAAACCTGTTCACCACTTTGCTTAGATAACTCTTTCCTGGCCCTGTGATTCAGAGGCTAGTAGACAGCAGAGGTTAAAGAACCACATGTAGAGTGTGGCAACACAACAGAGTCAGCCAGTGGAGTATGGAGCTCTTGGTGTTGATGATTGTGACTCACACACCCAGAGGAAACCATGCTCTGTGTTCATTTATGTTGTGCCAAAAATAACCTTTTTAAAATGTGTATTCTGTTTTCACCCTTTCCAACACAACTGTCATGTCAAATCAATGTTTTATGTTTAATGGGCCTGACCGATTCAGCATGTATCAAACAGTATGTATCAAACCATTCATAACGTAGCCATTCAGTGTATATGAAAGCTACCATAGTTACCAACATCACCTCTGGTTTAATGACACTAATGACTGTAAACTGGGTTTTACTAATATGGAGCCAAGGCTTTCACAGCAGTTATGGACCAGTCAATGGAGGAATgtcttttaaaaataaaaattaacagaTATTGTGAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU206757 lncRNA upstream 124812 73706332 ~ 73766435 (+) True G182209
TU206778 lncRNA upstream 156431 73733413 ~ 73734816 (+) True LOC110495913
TU206700 lncRNA upstream 254259 73636550 ~ 73636988 (+) True G182155
TU206699 lncRNA upstream 255154 73635627 ~ 73636093 (+) True G182154
TU206576 lncRNA upstream 303582 73587104 ~ 73587665 (+) True G182037
TU207704 lncRNA downstream 5800 73990537 ~ 73991061 (+) True G183089
TU207706 lncRNA downstream 6628 73991365 ~ 73991640 (+) True G183091
TU207719 lncRNA downstream 10418 73995155 ~ 73995604 (+) True G183099
TU207720 lncRNA downstream 10945 73995682 ~ 73995943 (+) True G183100
TU207721 lncRNA downstream 11967 73996704 ~ 73997226 (+) True G183101
XM_021571480.2 mRNA upstream 122716 73756972 ~ 73768531 (+) True idh2
XM_021571436.2 mRNA upstream 153518 73733395 ~ 73737729 (+) False LOC110495913
XM_036955241.1 mRNA upstream 313067 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 313068 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 435744 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571532.2 mRNA downstream 14532 73999269 ~ 74010559 (+) True LOC110495967
XM_021571589.2 mRNA downstream 85227 74069964 ~ 74104249 (+) False LOC110495989
XM_021571578.2 mRNA downstream 85229 74069966 ~ 74110824 (+) True LOC110495989
XM_021571609.2 mRNA downstream 141486 74126223 ~ 74139502 (+) True LOC110495996
XM_021571685.2 mRNA downstream 193746 74178483 ~ 74198686 (+) False LOC110496029
TU206688 other upstream 266729 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 281010 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 311172 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 548970 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 544912 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 726844 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 901361 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1052515 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1101885 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile