RNA id: TU206891



Basic Information


Item Value
RNA id TU206891
length 773
lncRNA type sense_over
GC content 0.37
exon number 2
gene id LOC110495946
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73883551 ~ 73984737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCGAGCCCTGGTTTGGTTCAGCTGCAGCCCTGGGCATCTCTGGGGATCCCTGCAGAGCTTCTGTTACTCTGTCACCGCCTGACTGGGAGCTACTGGTACAGACCACCGCAAGACCTTGTCCTCTATTGCTCAAGATCTCAGCTGAGCCCCTGGGGTGGTTTGAGTGCATCGAGGCTGATTGGAGGCGGCTGTCCATCCTGGAAGGCTCGTTGTGAGGTGAAATGTCATCAGTCCAAGCCCAGAGTCATCTGTAGCCCCAGAGGAGCTGCCCGGCTTCACTTTTACAACAGAGCACCAGTCTCCCATTCAGGGAGCCCAGAcctacaggaagagagggagaggaaatatACACAGGGGAGAAGAAGACACTCTTCATGAATTCCCTAAAATCGTGAAAGACAAACCGTATGAGTTGGCTGGCAGTCGTGAGGAGAGGAGCTATGTGGACAATAAGCATGGCCCAGCTCTGTCTCCCGGCATTCCTTCTCCTACTGGCCTACGCCTTTGTCCAAGCAGCTGCCACCGAGGACGATGTCACTCCACGACTCAGCTTCACTTACAGTAAGTGTCATCCATCGCCTTCCTTCCTGactgtcccggacctgctgttttgaccctctctctctctctctctctctctctctctctctcgctctttctctttctctctctctctaccgcacctacTGTCTCAACCtatgaatgctcggctatgaaaagccaactgacatatACTCCTGaagtactgacctgttgcaccctctataaccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU206757 lncRNA upstream 117125 73706332 ~ 73766435 (+) True G182209
TU206778 lncRNA upstream 148744 73733413 ~ 73734816 (+) True LOC110495913
TU206700 lncRNA upstream 246572 73636550 ~ 73636988 (+) True G182155
TU206699 lncRNA upstream 247467 73635627 ~ 73636093 (+) True G182154
TU206576 lncRNA upstream 295895 73587104 ~ 73587665 (+) True G182037
TU206895 lncRNA downstream 25860 73962992 ~ 73963709 (+) True LOC110495946
TU207704 lncRNA downstream 53405 73990537 ~ 73991061 (+) True G183089
TU207706 lncRNA downstream 54233 73991365 ~ 73991640 (+) True G183091
TU207719 lncRNA downstream 58023 73995155 ~ 73995604 (+) True G183099
TU207720 lncRNA downstream 58550 73995682 ~ 73995943 (+) True G183100
XM_021571480.2 mRNA upstream 115029 73756972 ~ 73768531 (+) True idh2
XM_021571436.2 mRNA upstream 145831 73733395 ~ 73737729 (+) False LOC110495913
XM_036955241.1 mRNA upstream 305380 73456669 ~ 73578180 (+) False LOC110501876
XM_036955248.1 mRNA upstream 305381 73456675 ~ 73578179 (+) False LOC110501876
trnah-gug-2 mRNA upstream 428057 73455432 ~ 73455503 (+) True trnah-gug-2
XM_021571532.2 mRNA downstream 62137 73999269 ~ 74010559 (+) True LOC110495967
XM_021571589.2 mRNA downstream 132832 74069964 ~ 74104249 (+) False LOC110495989
XM_021571578.2 mRNA downstream 132834 74069966 ~ 74110824 (+) True LOC110495989
XM_021571609.2 mRNA downstream 189091 74126223 ~ 74139502 (+) True LOC110495996
XM_021571685.2 mRNA downstream 241351 74178483 ~ 74198686 (+) False LOC110496029
TU206688 other upstream 259042 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 273323 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 303485 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 541283 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 592517 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 774449 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 948966 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1100120 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1149490 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile