RNA id: XM_021571532.2


Basic Information

Item Value
RNA id XM_021571532.2
length 2590
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC110495967
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 73999269 ~ 74010559 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTGTATGGCAGTGAATAGAGTTCATAATTAGCGTGGGTAAAGTATTACCACCTCCAATTCTCAACTCTGGTTCGTGTCTTGGCGAAGATTTTGACCGCTGGTGCTGGATAAGGTGGAGATCAAATGGTCCAAGCTGTTGCTAGTCTATCGATCTTATTTTACACAAGGTATTATTTCCCTTGTAACTTTTAAACTCGAAATACGGAGCCATGGACAGACCCAGCCTCGAGAGACTGTTTTCAGCGTGTGACATTAACAGGTCTGGTGTGATTGAATACGAAGACTTTGCGGTTGTTTGTCGAGAACTCAATGTGCCTGACGACGAAATCAAAACTTTATTCAACAAATTCGGTGCTAGTGCAGATGGATGTATCAATTACAGCAAGTTCTCCTCTCGGTTTCAAGAGGTTTCAGCAACGTTGGATTTCGCATCTTTTGGGGCTTCTCCTCAAAGTCAAGGGAGTCCTTGGGACGAGTTCCAGAGCAGGCTTGACGATGCAACAGGTCACCTCTCGGGAAGACTGTGTGATCAATTGGCTGAGCTGTACCAAGCCATTTACTCCACCTCAGAACCTCTCTTGTTGCAACATTATGAGGGACTTGTTGATGCTCTTGTCAGTGAGAGCAAGGAACGCAGACTTGAGAGTGAGCAGGTGGAAACCAGTTTCAGAAGAACAGAGGAGCTCAACACAAGTCAGTTGGCAGAGCTGGAGGAGGACATGCAGCAGCAGCTTTCCCGTGTAGTGGACAGGGTGAGAGAAGAGGAGCTTAAGAAAATGGAGGGAGTCATGGATACACTCCAGAGAAGGCATGATAATGAAGTGGCAGATCTACATACTGCTGTGGACAGGTTGTTGAAGTGCCAAGATGAATCTGAACTCAACAATTCCAGGCAGGATGTTGACAAACTACACCACAAAATATGTGAACTGTCTCTGGAAAATGAGCAGTTACGGACTTCGCTCGTCAAAGCTCAGACAAACATCTCCATTCTGCAGGTAGAGATGGACAAGCTGAAGAACATTTATGCAGACCAGAAACTTCAACATGAGAGAGAAAGTGATGACCTGAAAAAGATGGTTATAGAATACCAGTCCTACTCCAGTCACATTGAAATACTCCAGGTCATGAACAAAAAGCTGTATGACTGCAATGATGACTTGCACTCTGCATTAATCAACGATGTGGCATCAAGTAAGAGGCTATCCCCCGACAATGAAATCGCAGCTCGAAGAATGAAGCCAGTTCGACAAAGCACACTTATAAATTCAGGGGGAGAGAACACAGCTGTGGACTCCAGTAAAAGGACCTACTCCCATGTAGCCAGCTGGGCTGATAGATACCTGGACAGTGGTGTGTCCCTGCCTATGGACGCTGAAAGCTCAGGCAGCGAGTCTGACAGTGACGTCTCGACAGAAACCGTACACCAGAGTTATTCATATGTGCCCTCAGACATTGAGATATCAGACGTGAAATCAGAAGTAAGTCGGGCAACACTGTCTGTATCTCCCAGAAAAACTCTCGCTATTGCTTCGTCCATCCGGAGACGCTTGTCTGCTTTCCCCATAAAGCCAACCGATGCAGACATTGTTGACACTGGTGGCCCTGCTCCCATGTACCGGTTAGTTTTGGCGGGAGATGCAGGATCAGGGAAGTCCAGCTTTCTATTGAGGTTGAGTCTCAATGAGTTCAGGGGAGACATTCAGACGACTTTGGGAGTTGATTTCCAAATCAAGAAGATGTTGGTGGATGGAGAAAAAACTAACCTCCAGATATGGGATACTGCAGGACAAGAGAGGTTCCGCAGTATTGCCAGGTCTTACTTCCGTAAAGCCCATGGAGTCTTACTGCTGTATGATGTCACTTCTGAGAGCAGCTTCCTTAATGTCAGAGAGTGGATGGGAGAGATTCAGGAATCTAGGGATGAGCAACTCCCAATGTGTGTGATTGGGAACAAAGTGGACCTGCGGGAAGATCGACCGGAGGGAAGCTGTGTCAGCACTGTCGACGGGGAAAGGCTGGCTAGAACATACAATGCCCTGTTCTGTGAAACTAGTGCCAAAGCTGGAACTAATGTAGTGGAAGCAGTACTTCACCTGGCAAGAGAAGTTAAGAAAAATGTGCAACTGAGACGGCAATCAGAATCACAGGTGAAGTTGAGTTTAAGTGTTCCAAAGAAAGCTAACTGCTGCAGAGTATAACCATGGAGACTCATCACCAGAGGGAAATGCATCTGACTGGAGTCTAGGGGCTCTATTTTAGCACCACAGCGTAGCTAAATATGTATAACAGACGACTGTAAAGTTAGCTAAATGTATGTCTAGTTCGTATTTGAATCTACATAGTCCGATCTTTAGCAATAGTCAACTCCTGATAAATGTATTAGTTCTGGACTCTCATGAACGTATTATAAATGGGACTGTTGTACATCTCTCAGGAATTGACATTGAAAAGCAATTAAGTTTTAGCTCAGTCTAGAGACTGCTGTGGTTAGAAACATGCAGAAATTAATCACATTTTACATTGGTGCTTTATTTCATGTTTgctaattgtatttttattgattAAAGTTTCTGTACAGGTGTGAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K17199 RASEF, RAB45; Ras and EF-hand domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207721 lncRNA upstream 2043 73996704 ~ 73997226 (+) True G183101
TU207720 lncRNA upstream 3326 73995682 ~ 73995943 (+) True G183100
TU207719 lncRNA upstream 3665 73995155 ~ 73995604 (+) True G183099
TU207706 lncRNA upstream 7629 73991365 ~ 73991640 (+) True G183091
TU207704 lncRNA upstream 8208 73990537 ~ 73991061 (+) True G183089
TU207731 lncRNA downstream 5032 74015591 ~ 74015797 (+) True G183108
TU207740 lncRNA downstream 5455 74016014 ~ 74016360 (+) True G183117
TU207744 lncRNA downstream 7614 74018173 ~ 74034081 (+) True G183119
TU207780 lncRNA downstream 50337 74060896 ~ 74129871 (+) False G183152
TU207781 lncRNA downstream 105527 74116086 ~ 74129871 (+) True G183152
XM_021571519.2 mRNA upstream 14532 73883551 ~ 73984737 (+) False LOC110495946
XM_021571502.2 mRNA upstream 14532 73883556 ~ 73984737 (+) False LOC110495946
XM_021571494.2 mRNA upstream 14532 73891247 ~ 73984737 (+) False LOC110495946
XM_021571509.2 mRNA upstream 14532 73891247 ~ 73984737 (+) False LOC110495946
XM_021571480.2 mRNA upstream 230738 73756972 ~ 73768531 (+) True idh2
XM_021571589.2 mRNA downstream 59405 74069964 ~ 74104249 (+) False LOC110495989
XM_021571578.2 mRNA downstream 59407 74069966 ~ 74110824 (+) True LOC110495989
XM_021571609.2 mRNA downstream 115664 74126223 ~ 74139502 (+) True LOC110495996
XM_021571685.2 mRNA downstream 167924 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA downstream 168019 74178578 ~ 74198686 (+) False LOC110496029
TU206688 other upstream 374751 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 389032 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 419194 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 656992 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 519090 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 701022 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 875539 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 1026693 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 1076063 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile