RNA id: XM_021571550.2



Basic Information


Item Value
RNA id XM_021571550.2
length 748
RNA type mRNA
GC content 0.38
exon number 4
gene id LOC110495977
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74010498 ~ 74014413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GAAGCAGCTACTCTCGCGATGTCGCGTATCAACGCGTTCAATTGCCGTGACGAACATCAAATATTGTCGGTGCACAGCTGCCAGGCTTGGTTGTGGCATCCTTCTCCACACGGTCAGCTACAAACCATAAACAAAATGACAAGGGGAAATCAGCGTGACCTTGCTCGTGCTAAAAATGCCAAAAAGCAAGGGAATGACAAGGGAAAGAAGGCAGATGATGGCATGTCTGCTGCTGCAAGGAAGCTTAGGGATGCAGAGATAATGCAACAGAAGCAGAAAAAAGCCAGTGACCCGAAGCCGAGTGACGAGAAAGCCAAATAGCAGCAGGATACAGAACCCAAACTACCATTCTCAAATATCAAGATGTTACCTATTGATTAGGGGTTTTTTTTGTCCCATGCTCTGGGGTACAAAACCAGTTAAATTTTTGGTGGTTGTACTTTAGTTTGAGAAATTCATGGTTTTGAATGACTAATGCTTAAGCCTATTTCAAAAGGTCTAATGTTAAATCAGTATTTACAATGTAAAGAACAAGAAATTCAGACTCACAACAATCCTGTATTTTTGTATTCCCTCCTAGATTTTAAATAACGCAACTAGTGGTTTTGTTTATTCTTACTTTTTATATTAAGGATTGGCATATACATTGctgatgaaataaattaaagGATTTATTCTAACAAATTATAATTCACACCTGTACAGAAACTTTaatcaataaaaatacaattagcAAACATGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207718 lncRNA downstream 15501 73994721 ~ 73995001 (-) True G183098
TU207707 lncRNA downstream 18827 73991340 ~ 73991675 (-) False G183092
TU207711 lncRNA downstream 18827 73991380 ~ 73991675 (-) False G183092
TU207708 lncRNA downstream 18827 73991431 ~ 73991675 (-) True G183092
TU207699 lncRNA downstream 23437 73981328 ~ 73987065 (-) True G183084
TU208244 lncRNA upstream 4846 74019259 ~ 74020096 (-) True G183544
TU208298 lncRNA upstream 104645 74119058 ~ 74120268 (-) True LOC118941541
TU208303 lncRNA upstream 126624 74141037 ~ 74143053 (-) True G183602
TU208337 lncRNA upstream 130172 74144585 ~ 74144786 (-) True G183631
TU208418 lncRNA upstream 182459 74196872 ~ 74198670 (-) True G183672
XM_021571468.2 mRNA downstream 235054 73768584 ~ 73775448 (-) False LOC110495933
XM_036955327.1 mRNA downstream 235054 73768584 ~ 73775448 (-) False LOC110495933
XM_036955333.1 mRNA downstream 235054 73768584 ~ 73775448 (-) False LOC110495933
XM_036955341.1 mRNA downstream 235054 73768584 ~ 73775448 (-) False LOC110495933
XM_036955350.1 mRNA downstream 235054 73768584 ~ 73775448 (-) True LOC110495933
XM_021571562.2 mRNA upstream 4106 74018519 ~ 74067110 (-) True LOC110495986
LOC110501884 mRNA upstream 97565 74111978 ~ 74112847 (-) True LOC110501884
XR_005037845.1 mRNA upstream 104653 74119066 ~ 74140876 (-) False LOC118941541
XM_036955467.1 mRNA upstream 107870 74122283 ~ 74125960 (-) False LOC110496007
XM_021571622.2 mRNA upstream 107870 74122283 ~ 74126209 (-) True LOC110496007
TU207716 other downstream 16957 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 334079 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 664655 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 932123 73076027 ~ 73078379 (-) True LOC110495704
TU207073 other downstream 943778 73027384 ~ 73066724 (-) False G182494
TU208238 other upstream 92470 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 716459 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1591814 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1862946 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1970746 75985159 ~ 75989573 (-) True tnni1c

Expression Profile