RNA id: TU207735


Basic Information

Item Value
RNA id TU207735
length 722
lncRNA type read_through
GC content 0.39
exon number 3
gene id LOC110495977
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74010498 ~ 74014413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGCGTTCAATTGCCGTGACGAACATCAAATATTGTCGGTGCACAGCTGCCAGGCTTGGTTGATTGGCATCCTTCTCCACACGGTCAGCTACAAACCATAAACAAAATGACAAGGGGAAATCAGCGTGACCTTGCTCGTGCTAAAAATGCCAAAAAGCAAGGGAATGACAAGGGAAAGAAGGCAGATGATGGCATGTCTGCTGCTGCAAGGAAGCTTAGGGATGCAGAGATAATGCAACAGAAGCAGAAAAAAGCCAGTGACCCGAAGCCGAGTGACGAGAAAGCCAAATAGCAGCAGGATACAGAACCCAAACTACCATTCTCAAATATCAAGATGTTACCTATTGATTAGGGGTTTTTTTTGTCCCATGCTCTGGGGTACAAAACCAGTTAAATTTTTGGTGGTTGTACTTTAGTTTGAGAAATTCATGGTTTTGAATGACTAATGCTTAAGCCTATTTCAAAAGGTCTAATGTTAAATCAGTATTTACAATGTAAAGAACAAGAAATTCAGACTCACAACAATCCTGTATTTTTGTATTCCCTCCTAGATTTTAAATAACGCAACTAGTGGTTTTGTTTATTCTTACTTTTTATATTAAGGATTGGCATATACATTGctgatgaaataaattaaagGATTTATTCTAACAAATTATAATTCACACCTGTACAGAAACTTTaatcaataaaaatacaattagcAAACATGAAATAAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207718 lncRNA downstream 15497 73994721 ~ 73995001 (-) True G183098
TU207707 lncRNA downstream 18823 73991340 ~ 73991675 (-) False G183092
TU207711 lncRNA downstream 18823 73991380 ~ 73991675 (-) False G183092
TU207708 lncRNA downstream 18823 73991431 ~ 73991675 (-) True G183092
TU207699 lncRNA downstream 23433 73981328 ~ 73987065 (-) True G183084
TU208244 lncRNA upstream 4878 74019259 ~ 74020096 (-) True G183544
TU208298 lncRNA upstream 104677 74119058 ~ 74120268 (-) True LOC118941541
TU208303 lncRNA upstream 126656 74141037 ~ 74143053 (-) True G183602
TU208337 lncRNA upstream 130204 74144585 ~ 74144786 (-) True G183631
TU208418 lncRNA upstream 182491 74196872 ~ 74198670 (-) True G183672
XM_021571468.2 mRNA downstream 235050 73768584 ~ 73775448 (-) False LOC110495933
XM_021571562.2 mRNA upstream 4138 74018519 ~ 74067110 (-) True LOC110495986
LOC110501884 mRNA upstream 97597 74111978 ~ 74112847 (-) True LOC110501884
XR_005037845.1 mRNA upstream 104685 74119066 ~ 74140876 (-) False LOC118941541
XM_036955467.1 mRNA upstream 107902 74122283 ~ 74125960 (-) False LOC110496007
XM_021571622.2 mRNA upstream 107902 74122283 ~ 74126209 (-) True LOC110496007
TU207716 other downstream 16953 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 334075 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 664651 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 932119 73076027 ~ 73078379 (-) True LOC110495704
TU207071 other downstream 949185 73056242 ~ 73061313 (-) False G182494
TU208238 other upstream 92502 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 716491 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1591846 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1862978 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1970778 75985159 ~ 75989573 (-) True tnni1c

Expression Profile