RNA id: XM_021571562.2


Basic Information

Item Value
RNA id XM_021571562.2
length 1668
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110495986
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74018519 ~ 74067110 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCGGTTTTCATAAAAACTACAGACCGTTGCTAATGGATGAAGGCACCTCTCAGCCGTAACTAGACCGAACGACTGCTTCCACACTACAGAATCAACCGGCCAGGCAGGCATCGTGGGGATAGATAGGCTGGAGGAAGATCATCTCTCTTGGAGGCCTTTACAGATGGTGTCCATTGCTCCCGGTAGTGAGATGGAGACAGAGCCCTGCCCTGGAGAGCAAGAGAAGCGGGTTGTGGAGACCAATGAGCCAGAGTTGAAGGAGGCCTACACAGGTCCTGGTGACAAGGACAGTCAGAAAGAGAAGGAACTGTCCCATGGGCCTCAGCAGGAAGATACGGAGCCCCATGGGGAGGGAGACCCCAGGACAGAATGCCAGGGTGGAGGTAATGCTGGCACTACATTAAACACCCTCTCTGTCCCAGAGAAGACAGAGACCCCCTGTGTGGAAGAGAGGAAGCTGAAGAAGACCCCCAGTTTTGCAAAAACAGTGAGGTTCTGCGAGACACAGTCtgtggaggacagggagagctcagAGGAGAGTCTCTTCCCAGACCATGAGATGGTGCAGTGGATCTCCTCCAGCTTTGAGGAGCTGTTCCTGGCTGAAGACTGGGAGGACATCACAGATGACCGCCTGTTGAGGAAGAAGGTGCTGGCGCCTGGCCCCCAGAAAGCTGAGCACCCAGCCTGGGGTCAGGAGGTCACAGTCAAAATGCAGGGAGTGCTGGAGGATCGGAGTGTGGTGGAGAAAGACCGTAAACTGGTGTTCGTCATCGGAGAGGGAGATGTCAACCAGGCCCTGGAGGAGTGTGCTATGGCCATGCAACAGGACGAGATCACATTACTGCTGGCAGATTCACAGTACACCTATGGACTTCTGGGAAGGGAGCCTGATATTCCAGCCTGGGCCCCCTTACTCTACCAGCTACAACTCCTGAACATCAGAGAGAAGCCCGACCCCCTGATTCTCCCCATGTCTGACCGTATACGCATCGGCAACCAGAAACGAGAGCGGGGGAACTTCCACTTCCAGAGGGAGGAGTACAGCATGGCTACCAGGGCCTACTGGATGGCTCTGGATGTCCTTACTACACACACTAAAGATGGTGGAAATGCTGTgctggtggagggggaggaggtgcaGGACTACCGGGTGAAGTGTCTCAACAACCTGGCAGCGGCTCAGCTGAAACTGGAGCAGTACGACGACGCACTACACACCAGCCGGGATGTTTTGTCCCTGGACCCACAAAATGTCAAAGCCCTCTTCAGAACAGGAAAGCTTCTGTCAGACAAGAGCGAATACGGGGAGGCCATGGAGATACTGAAGAAGGCTCTGAAACTGGAGCCGTCCACCAAGGCCATCCATGTTGAGCTGTCAAAGCTAGTGAAAAGGCAATCAGGAGGCAAAAACACCCAGAAGTGGCAAGCCAAACCTGCCCAGCTCCTTGGAGACAATATTGCCCCATTTCTGACTCCTAACAAGAAGCCACCTGGAATTTCATGGAAGTTCCTGCTTGGTGCTCTGGTGGTGGCCTTGGGCAGTTTAGTGACGTCAGTGGTTCTGACTGCAAGAAACTGACGTCTTCTGCAAAGGAACTGTCCAGCACATGAATAGTAAAGTGACGTGTGTCTGCTGTgaataataaataaaacactgCACTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207735 lncRNA downstream 4138 74010498 ~ 74014381 (-) True LOC110495977
TU207718 lncRNA downstream 23518 73994721 ~ 73995001 (-) True G183098
TU207707 lncRNA downstream 26844 73991340 ~ 73991675 (-) False G183092
TU207711 lncRNA downstream 26844 73991380 ~ 73991675 (-) False G183092
TU207708 lncRNA downstream 26844 73991431 ~ 73991675 (-) True G183092
TU208298 lncRNA upstream 51948 74119058 ~ 74120268 (-) True LOC118941541
TU208303 lncRNA upstream 73927 74141037 ~ 74143053 (-) True G183602
TU208337 lncRNA upstream 77475 74144585 ~ 74144786 (-) True G183631
TU208418 lncRNA upstream 129762 74196872 ~ 74198670 (-) True G183672
TU208302 lncRNA upstream 148207 74215317 ~ 74221649 (-) True G183601
XM_021571550.2 mRNA downstream 4106 74010502 ~ 74014413 (-) False LOC110495977
XM_021571468.2 mRNA downstream 243071 73768584 ~ 73775448 (-) False LOC110495933
LOC110501884 mRNA upstream 44868 74111978 ~ 74112847 (-) True LOC110501884
XR_005037845.1 mRNA upstream 51956 74119066 ~ 74140876 (-) False LOC118941541
XM_036955467.1 mRNA upstream 55173 74122283 ~ 74125960 (-) False LOC110496007
XM_021571622.2 mRNA upstream 55173 74122283 ~ 74126209 (-) True LOC110496007
XM_036955486.1 mRNA upstream 89963 74157073 ~ 74167350 (-) False LOC110496015
TU207716 other downstream 24974 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 342096 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 672672 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 940140 73076027 ~ 73078379 (-) True LOC110495704
TU207071 other downstream 957206 73056242 ~ 73061313 (-) False G182494
TU208238 other upstream 39773 74106883 ~ 74110791 (-) True G183538
TU208774 other upstream 663762 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1539117 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1810249 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1918049 75985159 ~ 75989573 (-) True tnni1c

Expression Profile