RNA id: XM_021571578.2


Basic Information

Item Value
RNA id XM_021571578.2
length 5709
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC110495989
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74069964 ~ 74110824 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGAATGTCGCCAATTTACCTCAGTTGTAGACATGGCAGCGCTGAGACAGGAGCATCGGTATGGGCTCTCCTGTGCAAAAATCAACAAAAACGTTCAAAATAAAACTCTGTATCACGTCAAGCTAACTGATACCGCCATTCGAACGCTTGAAGCCTACCAAAATCTTAAGGGATCCTTACCAAATCAGCCAGCAATTTGCTTCAAGGGGAGCCAGGGGTACATCAAGATCCCCGCCCCGTCCCCAGATGCCTCGGACGCACTACGGGTCTTCTCCTTCTACCTGTCCAGTGATAGCAAGGACAAACCTCAGGCCAGCTTCGACTGCACACACCAGTATGTCTCAAGGGAGGGCAGGGAGCACCTGGAGGGCCAGGGCAGTATTCAGGACAAGATCACTGTGTGTGCCACTGATGACTCGTACCAGATGACCCGGGAGCGCATGTCTCAGGTGGAGAAGGACATCATGAGCAGGTCGGCCATCGAGATCAAGCCAGGCTCCACTCGTGGTAAATGTGTGAAGATCCAGAGGAAGCAGGGCCTGTCGTCAAGCAtggacagcagcagcaacaagcaCTCCCCCAGCAACAAGAGGAGCGGGGCCCCCAGCCCAGTGGCCCTCCGGCCCCTAAGAGACCGCATCATCCACGTCTTGGCCTTGAAGGCCTACAGGAAGCCTGAGCTGCTGCTGtggctggagagggagagggccagTCCTAAGGACAAGGCTGATCTGGGAGCAGTACTGGACGATGTTGCTAAACTGAATCCCAAAGACCACAGCTTTACTCTGAAGGATGAGTTCTACAGTCATGTCCAGAAGGATTGGCCCGGTTACCTAGAGGAAGAGAAGCAGCTCATCCATAGGCTCCTGGCCAGGAAACTGCAGCCACTGAGCAGCAGTAGCCAGTTGAAGAGTTTCCAGTCAAACCATTCATTCCACAAAACCCCTGGGGATTCTCCGTCACAACTCAGCCCGGTCAAAACTCCCTCTGTGAAACGCCCATTTCCCTCTGAGCTATCTGATTGTCAGACCCCCAAGAAGCAAAGACTATTAGACCACAGTTTACCCCTGCAGTCCCTTTCCAATGGACACCTTGGTCCCATTGGAGCCCGTAGCTCATCTGGTCCAGGCAACACCAGTGTACAGACCAAAACAGAGTTTGAGAGAACCAACAATCACATCCAGGGAAGCCCTAATGGTCTCTACACACGGCACAAACTGGATGGTTCCTCCAGCATTCCCAAGCTGGAGAGGACCGAGCCGGTCCCAGCAGTACCAAGCCCCAAGGCCCCACAAACAGAGCCCTCCATCTGCACTGACCAGCAGCTAGCCAACGGCCAGCACAAAAAGAAGAAGTCCAAGAAGCACAAAGACAAGGAACGGGAGCACTTAAAACAAGACTGGATAGAGAACAGTCCCGACCTGAAGCAGAACCAGGAACATTTCAATGACCATGAGGGGGCTAAAACACCTGTCACTCGTACTTCACCGGAAGAGCTGCCTGACTATTTCATAAAGTACAACATCATCACAGCCTCAGAGCAACGGCAACAGTACAAGGAGGATTTCTGTGCAGAGTATGATGAGTACAGGGCCCTGCATCACCGGATCGGTACAATCACAGAGATGTTTGTTCAGCTGAGCTCAAAGATCAACACTCTCTCCCCCGGTACACAGGAATACAAGCTCATGGAGGACCAAATCCTGCAGAAATACAGAAAATATAAGAAAAAGTTTCCTGGTTACCGGGAAGAGAAGAAGCGATGCGAGTATCTGCATCAGAAACTGTCTCACATCAAAGGTCTGATCCTGGACTATGACCGTATCCAGGCCCCTTCATAGTGACTGGCCTGCACCCTGCTGCCACAGGGTGCTATTTTATCAACGGACCAAAAGACTGACCAGCCGAGCCTGGGTCTGGAGTGTTTAATCACATATGAATCACACATTCACTTTATTCCTCCAAGTGttgatggaagagaggagagaggttctCTTATATGAAGTGGGCCAAGACCAGCGACTCGTGATCAAATGAATCATTTTTTGAGGACGAGTGTTGTTGTAATGGCTGGCAATTTAAGCCAAATTCCTTTTTCTACCCATAATGTTAATGTACGTGAACTCTCCTGCCCAATGCTTTTAACGTTTGGTCTATTGCCATGACTACACAGAAAGACTTAGTTTGATGGTACAATCATAAGGACAGATGAGAATAAATGCTCTTCACACCCAGTCTTCTATCCATGCTATATTTAAGTACCCAGTACAATTTGCGGTTTGTTGTTTCACTGAATGTATAGATGTAAAATAGTGATATAAGATCTTGATTTCTATAGAGAGGGTTGTAATCACTGGATTAAGATTAGGGGACGCTGGAAGATATGCAATGTTATGTGGAAATATCTCAGACCTCTATGAACAAGAAGTGAACTGTTTGAGTTGATAATTTCTCTATTTGTTAAAGTTGATgatacagtacatgtcattaatcaGACATGCCAGTCAAATCGCCTCTGACCCACATTTCACGTTCAGTCTGTAGTTCCTGTTTACAGTAATTGAGCCATTCTGCTTCATCAAATATGGGCCATGGGATTGGAAACAACTGCCCCCTCAATGCTGAAGAAAATGTTTATGAATCTTGATATTTGTATGATATAGTAAAATGCCATCTTAGTCATACAGTATACTCCCATGTTTCTGTTTAAACCACTACATTACTGAAAGAACACTAATCTGAATAAGAACTGCAATCAAACGCCAAAGTAATATTTTTGGATTGTTATGGCATTCTATTACCTTCTTATCCTTCTGGATAAATTATTCTCATTGTTTGAGCCAGTATTCTCTGACCTTTTGATGATAGTAATACAGTTCATACAATATTAATGAATATTTTATTACCTTGATCAATAGTCCAATACATTTGTGAGACTGAGTGGAATGCCAGAGCATTTAACAGTACTTCCAAAAGCCATTTTTATATTACAAAGCTTGTGCCTGTGTGATGTATTCTATCAGCCCAGCAAGAAACAGGATTGCTTCCGTGCAGTGATGAAATTCAATATTTTGAAGCTTTTGGTGTCTTTGGATTTCAACCTGGTTTAGGTTCGATAGATCAGAGATGAATCATAGTTCAAAGATGAGATTTGTGTGAACTTCTTCACTCTTGCTGTTGAAACTGCTCTGTAGGaaaatgctgtggtaaccattgGTAACATTGTATTTCTTAATGTTGCTGTAGCAGTCTACTAGATTTCACCTCAGCAAGATGGGACAGTTTATTTTCAGTTTGAATCAGTGAATGTTCCATTACAACATTGGGCTACTGGGTGTGTTTGTCTACAGTAGATGCATTTACACAAACTGGACCACATTAACTGAACCTCTCTGGGTGTACCTGTCGTCATCACTTGGGATTTCATACAGTTCACTTTGATTATCTGTGGCTTGAAGACATATATTTTTTCAAATACAGTGACTACTCGTAAGCAGTAATGAAATCAACGTGAGTGTCTGTGTACACTATCTTGCTACTTAATTGCTGTCTTAAATGTAAAGGGAAGATAGTTCATTTTGCCTTAACACACCATTAACACATTTTCATGTCTCTGATATTGACTTTCTGAAACGTAATGTAATCTCTCTTTTTTTAATCTGCTCAATTTAATATAATGTTTTAGGATCATGTATTTTAGTTCACATTTTTGGGGGTTGAAGGAAATGCATAATTTATGTTAATATATAATGCTTTCAATACTGCGTCTTATATGTCTGCACGTCTTTTTACATTGTTGATCTATTCCTCTACCATGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATAGCGTTTGTTTTGACGGTCTGTGAGTTGGGGCTCGATTCAATCAGATCTGCTTTAGCGAACATCCGCATATCGTTTGTTTTGACGGTCTATGAGGTGGAgctgttagagctgtcaaatccacaagtggctcccTGCATTATAGATAAAGCCAACATTGCATTTGACTACACGGAGTCGCATTAACAGAAATCTCATGCCGTCTTGTTTACACGATGGAACAGTGTAACGTGTAATGTAATCTGCACCTTGATTATGATGATAGAAACCCTCATTATTTAGTTTAACGATTTTTCAAGTTGAGCGTCATTATTCCTGTATAACCTACACTTTCTCCTTCTGAACATCTAACGCGAGTGGGGCGGTTGTGGCTTTGTGACAATGGTTGCAAGAGCAGCCACAACATCTGTCTGAGAGGGCCACAACATCTGTCTGCTGTCACCGCTTAACGCTTGATccgattgaatctaggccttaatTATTTTGTGTTTGTGATAGGTTAATTTCTGTTCGTTTCCCTCATGAGTGCTCTGTGGATAACTGTTTGATAATCATGAATGGAGTATAGAAAATGAATTGTGACTATGTTAAGGGCCTTTTTTTTCATCCATTACCATTCTTCACCACTGTTTCAGAGCTCCGTATAGAAACATGTCTGAAAGGTCTCTCAGAAGTGCTTGACTGGGCTAGATTCATCCCTGACATGTACACATAGTGGAAGTTTTCTGTCACAGTTTgggttctttttttattgttgAATTCTAAATGTAATAAATTAAATATATGCTACTGACTGTGGTATTCTGGAAAGCACATGACCAGATATGAGACTAGTACAGACcactgtctctgtgtgcagtATTGGACTGAGCCATATTCATCTGAATAAGTGCTAATTGTGATATACGCAGGAGTTAGCGAGGTGCCTTCTAATAGGAAAATCTGAGTCACATTGGCTTTAACATAATGTTATCTTTCATAATTGATTTGATTGCATGATTCAGGTGAAACAAAATATATGTACTCAAATTATTGGTCCCTAAATTTTATTTTTCATGTGTAGGACTACAGCTTTGTGGCTAAAGGTCCTTGAAAACTGTTAAGACATCCACAATGTGCTCTTGAAATGCAAAATGCCATTTAATGTGCATATTGCTTACAAATCAAACAACTCTagaatatttttttgtttattgtctCGCTGTTGCTGGTGCATTTACTTTGTTGATATTGGTAAATTAAATGTCTCAATAGAAATGTGAAATAAAATCTCTTGTCTAGTATAAATCACTACAGATTGTCGACTTTTGAGAACAAATTTGTGTAactattcttttttttttgcttccTTCTTTGCCCAATTTCCTCAATCTATTCAAGACAGACAAGAAGCCTCTACTTGACGAAAggtaaatgtaatatatatatatatatatatatatatatatatatatatatttgcaattGTCTGTGAGGGATGCTTTATCACCAACTTTTCCTCTAGAAAAATACTACAAAATGTATTAATGTctctgaaaaaaaaaataaagctCTTTTCATCAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207744 lncRNA upstream 35885 74018173 ~ 74034081 (+) True G183119
TU207740 lncRNA upstream 53606 74016014 ~ 74016360 (+) True G183117
TU207731 lncRNA upstream 54169 74015591 ~ 74015797 (+) True G183108
TU207721 lncRNA upstream 72740 73996704 ~ 73997226 (+) True G183101
TU207720 lncRNA upstream 74023 73995682 ~ 73995943 (+) True G183100
TU207781 lncRNA downstream 5262 74116086 ~ 74129871 (+) True G183152
TU207798 lncRNA downstream 30523 74141347 ~ 74141645 (+) True G183168
TU207805 lncRNA downstream 44422 74155246 ~ 74155558 (+) True G183175
TU207806 lncRNA downstream 45020 74155844 ~ 74156345 (+) True G183176
TU207811 lncRNA downstream 45798 74156622 ~ 74168006 (+) False G183177
XM_021571532.2 mRNA upstream 59407 73999269 ~ 74010559 (+) True LOC110495967
XM_021571519.2 mRNA upstream 85229 73883551 ~ 73984737 (+) False LOC110495946
XM_021571609.2 mRNA downstream 15399 74126223 ~ 74139502 (+) True LOC110495996
XM_021571685.2 mRNA downstream 67659 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA downstream 67754 74178578 ~ 74198686 (+) False LOC110496029
XM_021571660.2 mRNA downstream 68668 74179492 ~ 74198686 (+) False LOC110496029
XM_021571676.2 mRNA downstream 68668 74179492 ~ 74198686 (+) True LOC110496029
TU206688 other upstream 445448 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 459729 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 489891 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 727689 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 418825 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 600757 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 775274 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 926428 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 975798 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile