RNA id: LOC110501884



Basic Information


Item Value
RNA id LOC110501884
length 635
RNA type mRNA
GC content 0.44
exon number 2
gene id LOC110501884
representative True

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74111978 ~ 74112847 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGTGCCTGTCAAAGTATTTGCTTTGCAACAATTCTGCAATTAAAGAGCTTGTTGTCAAACTGCAGAGTCTGGTGTCCAGAACATGAGTTCTGAAAGGAAATtgttcagacTGGGGAACACTGTGAACTCCATTGACGAAGCCAGGCAGACTTTGTAGCTCTCTGACCCTGTGCTGCGTTTCTGCCTTACTGTGGCCAACCTCCAACGGCCCTTTGCTTTATCTGCAACAATTTGCTCTGGGCCAGAAATGTTGGCATTGTCTATGATATCAACAAGGAGCAGTGGAGCTTGAATGCCTCTCGTAGCTACTTCTTGCCAAGAAGTTAAGAGTCTAACCAGAGATGTTTATGTTGTTTTCCCAGATTATGGTTCAGAGAACCAAAAATAGGCTGTTTCAACAGAAAATGGATCAGCACCTCAAAGACAGACCCGATCATGCTTTTCTGCTCCTGCTTATTGAGAGTCTTAAAAGACATCCCTCGGTTGCCCTCAACACACTGAAAAACATTTGATATTTCCATTTCACTGGACAGGTTGGGCGTTTACCGGTCAAACCCAGGGGTGGTGGGCTTTTGTGGGCtaatctcctctctgttaggGTTAATGTCACCCCAGTTTGAAAATTAAACCATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208244 lncRNA downstream 91882 74019259 ~ 74020096 (-) True G183544
TU207735 lncRNA downstream 97597 74010498 ~ 74014381 (-) True LOC110495977
TU207718 lncRNA downstream 116977 73994721 ~ 73995001 (-) True G183098
TU207707 lncRNA downstream 120303 73991340 ~ 73991675 (-) False G183092
TU208298 lncRNA upstream 6211 74119058 ~ 74120268 (-) True LOC118941541
TU208303 lncRNA upstream 28190 74141037 ~ 74143053 (-) True G183602
TU208337 lncRNA upstream 31738 74144585 ~ 74144786 (-) True G183631
TU208418 lncRNA upstream 84025 74196872 ~ 74198670 (-) True G183672
TU208302 lncRNA upstream 102470 74215317 ~ 74221649 (-) True G183601
XM_021571562.2 mRNA downstream 44868 74018519 ~ 74067110 (-) True LOC110495986
XM_021571550.2 mRNA downstream 97565 74010502 ~ 74014413 (-) False LOC110495977
XM_036955327.1 mRNA downstream 336530 73768584 ~ 73775448 (-) False LOC110495933
XR_005037845.1 mRNA upstream 6219 74119066 ~ 74140876 (-) False LOC118941541
XM_036955467.1 mRNA upstream 9436 74122283 ~ 74125960 (-) False LOC110496007
XM_021571622.2 mRNA upstream 9436 74122283 ~ 74126209 (-) True LOC110496007
XM_036955486.1 mRNA upstream 44226 74157073 ~ 74167350 (-) False LOC110496015
XM_036955490.1 mRNA upstream 48208 74161055 ~ 74167349 (-) False LOC110496015
TU208238 other downstream 1187 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 118433 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 435555 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 766131 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1033599 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 618025 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1493380 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1764512 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1872312 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1980323 76093170 ~ 76099850 (-) True adm2b

Expression Profile