RNA id: XR_005037845.1



Basic Information


Item Value
RNA id XR_005037845.1
length 716
RNA type mRNA
GC content 0.49
exon number 5
gene id LOC118941541
representative False

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74119058 ~ 74140876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acgcagagtagGGGGAGCATTGCAATGacagatgaggaggaggggagggttttTTCAAGGTATAAAAGGAGGTTACAATGTTTGATCTGTCCTTTTTATCCTGCGGAGCCCTCCGCTTAAGGATTTGGGACTGGTGACCCTCTGTCAGGTCACTATGAAGTTCCCACTCTGTTTGcttgctgtgtattttatttgaagaggaggagaggaggaggaggaggaaaggagatgaaAAGCCTGCTCCCAAGGGCAGGTCACTGGGTCCCTGGCCATGTCCTGGTAGGGGGTGTTGGGAGTCTGTCCCCTCGCAGGTACTGACTCTCAGCATGACCTCGCAGGACCCAGTCAGTCGGGCCTGGTGAGCAGAGCCAGGAGCTGCAGATCAGCTGATCCGCAGCGACCTTGACGCACCGACGAACCCAAGCACCAGACACCTGAAGACACCTGAGACGACTAGATGAAGCTCATCCGAAGCACAAAGCTTATACTACTTACCTGAATAATTAAACGAAATGTACCCTAGAATGCCGCCAGATGAAGAACCATTCTTTTCTTTTTTTGGTTGGCTTCTGGTTGTCTGCGTTGCTTGGTTTCGGCGGCTCATGGGGGGCCTGCTGAAGAAAACGCATTCCCAAATACACTACAATGCTGAACGCATAATTTCCATGAAAATGTAAAATTTtaaataaaaattgaaaaaaacatTGCAACATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU208244 lncRNA downstream 98970 74019259 ~ 74020096 (-) True G183544
TU207735 lncRNA downstream 104685 74010498 ~ 74014381 (-) True LOC110495977
TU207718 lncRNA downstream 124065 73994721 ~ 73995001 (-) True G183098
TU207711 lncRNA downstream 127391 73991380 ~ 73991675 (-) False G183092
TU208303 lncRNA upstream 161 74141037 ~ 74143053 (-) True G183602
TU208337 lncRNA upstream 3709 74144585 ~ 74144786 (-) True G183631
TU208418 lncRNA upstream 55996 74196872 ~ 74198670 (-) True G183672
TU208302 lncRNA upstream 74441 74215317 ~ 74221649 (-) True G183601
TU208362 lncRNA upstream 100361 74241237 ~ 74251039 (-) False LOC110501892
LOC110501884 mRNA downstream 6219 74111978 ~ 74112847 (-) True LOC110501884
XM_021571562.2 mRNA downstream 51956 74018519 ~ 74067110 (-) True LOC110495986
XM_021571550.2 mRNA downstream 104653 74010502 ~ 74014413 (-) False LOC110495977
XM_036955333.1 mRNA downstream 343618 73768584 ~ 73775448 (-) False LOC110495933
XM_036955486.1 mRNA upstream 16197 74157073 ~ 74167350 (-) False LOC110496015
XM_036955490.1 mRNA upstream 20179 74161055 ~ 74167349 (-) False LOC110496015
XM_036955479.1 mRNA upstream 23256 74164132 ~ 74167340 (-) True LOC110496015
XM_036955505.1 mRNA upstream 100361 74241237 ~ 74303895 (-) False LOC110501892
XM_036955506.1 mRNA upstream 100361 74241237 ~ 74303895 (-) False LOC110501892
TU208238 other downstream 8275 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 125521 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 442643 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 773219 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1040687 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 589996 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1465351 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1736483 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1844283 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1952294 76093170 ~ 76099850 (-) True adm2b

Expression Profile