RNA id: XM_021571676.2


Basic Information

Item Value
RNA id XM_021571676.2
length 4431
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC110496029
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74178483 ~ 74198686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCTATCTTAACCAACCTCTGGCTAAATCGTGGGCTTTATGGATCTCCACTAGTAACACTATAACTACATAGATACTGGAGATCCATAAAGCCCACTAGCAGCTGCCCAGGCTAACGCATAACTAACTATTTTACACTACTGTAAATAATACTGAATCTAAGACACCTGTTGatatttagctaacgttagctaggtttttttttaaaagtcCCTGGCTTCGTTCGGCCTCCGACAAGTCGCGCCTTTACGGAGGCCAATCAGAAACGGTGGCGGTACATTTGAGTCCACAATTTTCCATCCGGTGCACCAGCAAAGGCATCAACACATAAACATCTTAAAGTCTGTTTACTGTCCAGCAAATGACAATGTAAGAGTGTATGCTTTGATTTTAATTGTAATTCATGAAGTGTATTGATGAATTGGCAAGTACTAGACAGGTAGCTAGATAGCTGTTTTTTTTAGTGCAAGGTCGCTCATGAGAGTCGTGACACATCTAGTAgcagatagctaacgttagctagctcaggTGGTGACAACAATCTGTGACTACTGCCGCGTTCATAACATATCCGGCCTCAAATACAACTGGGAACTGAGAGGGAGGGAAACcgtgttttgaacggtcatccaacttggcAGTCCAAGTCTGCAACTCGTGCCTCTTTCGAGAGCTCGGAGTTTCCGACCTAAAGATCACCGACTTCATGATTTTACCTGTTTATTGTCTTTCAacttcccagttgttttgaaagcaccatcccacagagtttctaaacctcttGGATCGTACtttcttgctagctagctagttacagcAACAGCACAGATTAATACAGCCTGTATTTCTTTGGTAACAACATCTGTCCTACAGTCCTAGCTAGCATCCTTATTTCTTGAAACATATCCATGTCCCACCCTGGCAGCTCAATCCATTGAAGATGGAAATGTATGTTTCCAGCATAAGCAAGCGTAATGCCACAAAGACAGATCTGAGTTTGTTGCTGGAGTGTCTGAAGTACCAGATGAAATGTCCTGCTTCACAGAAACAAGCTCTTTTCACCATCTACTCCATCTGTCAACAGAGAGAAGAGAATGTGGACTTCttcagagagatgggaggagtggTGTTTGTGTACAACCTCTCTAAATCCAGTGCTCACTCAGAGGTCAGGGAGACTGCTCAGTTCACACTGGGAATGCTGGCAGAGGCCAatgtgtACTGTAAGCAGGCCCTGTGTAGGAGGGAGACATTCAGTGATCTGGCAGAGTGTATGATGCAGCAGGACAGTCCACTGACCCAGAGGAGAGTAGCTGTCTACCTGCTCTCTGTCCTTGTCGCCAACAACCGGTCTGGCCAGAAGTTCGCTCAGACCTCAGGCTGTCTGGATATCCTGCTGGACTTGTTCAGGACTAGTTTCCCTCTCTCTGGTGAGGCCACAGTGAGACCTGCTAACGTCACTCAGCTGTTCCAACTCTGGACCTCTGTGTCCAGTGCTCTCTGTGGCTGTGTCAACAACCCCCAGaatgAGGAGagccagtgtatgtgtgtgtcagcctTCCCCCTGGTCAAGGGCTGGCTGCAGCAGCTCTCTCACCCCTACGCAGAGATGGTTCAGCCCATCTGCTCCTTTATATCCATGACTGTTGCCAACAACCATTGTGCTCAGGATAGTTTTTCCACAGTCGGCGGGCTCGGAAATCTGACACTCATTCTGATTCGCTTAGCCTCTGATGCCTCCCACAGCCCATTGGCCTGTCAGCTGTCTGTCATCATGACCAAGACCCTGTCAGCCTGCATCATTGACAACCCTGTGTTGGCGTCAGGTCTGGCAGGTTATGGTTTggttcctcagctccactcccTGCTGTCCAGCCCCAGCCTGGAGCCCCAAGACAGGCTCATTGTCATACTCACCCTGGGACACTGCACTGAGGCCTCTGAGGAGCACCGGTCTCAGTTCTTACAGTGTGGAGGTCTGTCCCTCATCACTCTACTGACTGAGTCTACCAGTGAAGAGCTCAGGAAGGCTGCTGCCTTCATACTACAGACCTGCAGACAGGCTACTGTGTTTCTGCGCGGTGCGGTTCATGGGGAGTCTCAGGGTCAGACTGCAGAGCTGGAGCCCCCTGTGGACCTGGAGGGGTACTGGAAGTCAGCACGAGACATGCTGCACAGGATCAACCAGCTGGAGAGACAACAGGCTCAGGGAgcggaggaggagtgggagggggTTGAACCAAGTTCCCCAGACCGACAGAACCCTGCAGAATGGGAGAGGAAGGAGCTACTtttacccctacctctacccccaTCCTTATCCCTACCCCCTCACCACACCTCTTTACCATACCAGGAGTGGAATGGAGACAGGAGGTATGAGGAAAGAGAGCgttggagaggagtagagagttggggtcaagagagaagagaggagggaggaggagaagagagggggatgtcCTGTGAACACACCCCAGTCTGGCCGGTTCTAGTGGGGAGgggtggggatggagagagagaggatctacACCATAGAGTCCTAGAGGAGAATCAACCCACAAACACAGGGCAGGACCTAACGAAGCGTGTAAGGAGACAGACCAGTGAGGAGCCTCAGAAACCCAGCCACAgcagcagagagagtgagagggagaagagaacacacacacaaaggcacaccACTCTGCACGTGTACACACTTGGAAACACACAACCAGAGAAGGACAGGGGCTTGGCAGCTAAGAGAAATACTTATCCTctctacacaaacacactcacagagaaaggCACAAacacagcatcacacacacagaccgagaACCGCAGAGACAAGCACCTTGGCATGAGAGAGCAGGCTCACACACCGTCTGTGTCAGCCGTGGGCTATGCTGGACCTGGTAGAGCTAGTGTCCCTGGGCAGCCCCGTGAtggagaggatgagaggtgtTCTGTATATCTGGGGACAGGAACACTGGTCCCTTCCTCCTCCAGTCCACTAGAAGGAcactcccagacacacacacacagCCAAGTGTTCAAGTGCCCAGCTCCAGGCAAGCCAGGAATGAGCAGGCAGAAGAAACCGTTGGATGAGGAAGGCTGTGTGTTCGGTTTGGTGACCAGCCGGTCGTTCCCTGTCCTCCAAAGGAACTGTCCCCACAGCTGTGACCTGCACCTGGTATTGCAGCAGgccacacacagctacacacagcaCCTCCGAGATATACGCAGGAGGAGAGAAATACACACaacgggacagagagagactcagcGAGGGACACAGAGCGTCTGGGATCACTGCAGAGATAAGATTCCTGAAGTGctgaacacacccacacaccgaTGTGATTTGAATTGGGATATGTGTCCTGTTGCAACAGAGGCCAGTCTGACTCCTGTCTGTAAAGGAGCCCTCCTGAGGAGCTTCTCAACCAACAGCGGACAACGCAACACTGATCACAACCATGTGAGTCTCACTCCCCTTGAGACCTGTGTTCCATGTGAAGGTATCGCTCGGAATCCTTTGCATAAAGGTCTGATGAAGAGCCTCTCTTCTGTGACCAGcagggggcaggagagaggagacagaaGGGAGGACGGTGTCATGGATGGGGAGGACGGTGTCATGGATGGGGAGGACGGTGTCATGGATGGGGAGGACGGTGTCATGGATGGGGAGGACGGTGTCATGGATGATCAGCAGAAGACTCTTTCTATGGGAAACCCATCTTTGACTAGCAGTTCCAAAACCAAGGAAAAGAGGGTGAATACcaatgagaggagggagaggaggaacttCAGCCGTGAGGAGGAGAGTTATCTGTGTCGCGGTATAGAGCGGTTTGGTCCATCCTGGAACTCCATCCTTTGGGCCTATCCGTTCCAGCCGGGACGCACCAACGTTGACCTGGCCAAGAAATACAAACGCCTGCAGGCTAAAGCCCAGGGTATGGATTCAGACTCCATGAGATCCTAGAAGAACACATTGTCTATTGTACATAAATCACAGTCAGATATTTGAAATACTCTAATGTAATATTCAATAATAGTTTAAATACTATAATTTAGTCCCCAGTTTGAAATGAATTACTATGCTGTGctactgtaaataaaataaaatgttttatttaatttagTACTATATTTGAAATATGTTCATTTCATGGTCATGGAGGATTAATGAAGGGTCCGTTCTGTATTTCTCAACCTTGTTTTTTTACACAGCAGTATTTTTCTGCCTATTTGAAGTAGTTGGAATGTTGTTTGGAATAGAAAAGTTGAAATTATTTGTGTAATGATTTGCACTTGACGATTTCATAATTTATCTTGTTGATTGTTAATGTATGGATTGAGATTGAAATGGTTGTTCACTCCTCATCCCCTGAAGTTGTTTGTATTGAATTAAACAGAAGGGTGTCTGTATGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207831 lncRNA upstream 1810 74173635 ~ 74177682 (+) True G183182
TU207811 lncRNA upstream 11486 74156622 ~ 74168006 (+) False G183177
TU207812 lncRNA upstream 11486 74157076 ~ 74168006 (+) False G183177
TU207810 lncRNA upstream 11486 74159335 ~ 74168006 (+) False G183177
TU207816 lncRNA upstream 11486 74163092 ~ 74168006 (+) False G183177
TU207904 lncRNA downstream 61687 74260373 ~ 74261170 (+) True G183226
TU208036 lncRNA downstream 239727 74438413 ~ 74438688 (+) True G183346
TU208046 lncRNA downstream 253852 74452538 ~ 74457151 (+) True G183354
TU208175 lncRNA downstream 532553 74731239 ~ 74732563 (+) True LOC110496107
TU208791 lncRNA downstream 554680 74753366 ~ 74753628 (+) True G184023
XM_021571609.2 mRNA upstream 39990 74126223 ~ 74139502 (+) True LOC110495996
XM_021571578.2 mRNA upstream 68668 74069966 ~ 74110824 (+) True LOC110495989
XM_021571589.2 mRNA upstream 75243 74069964 ~ 74104249 (+) False LOC110495989
XM_021571532.2 mRNA upstream 168933 73999269 ~ 74010559 (+) True LOC110495967
XM_021571509.2 mRNA upstream 194755 73891247 ~ 73984737 (+) False LOC110495946
XM_021571706.2 mRNA downstream 11777 74210463 ~ 74221530 (+) False LOC110496053
XM_021571714.2 mRNA downstream 12449 74211135 ~ 74221530 (+) True LOC110496053
XR_005037864.1 mRNA downstream 321090 74519776 ~ 74529598 (+) False LOC110496089
XR_005037863.1 mRNA downstream 321090 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA downstream 321090 74519776 ~ 74529599 (+) False LOC110496089
TU206688 other upstream 554974 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 569255 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 599417 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 837215 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 330963 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 512895 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 687412 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 838566 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 887936 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile