RNA id: XM_021571706.2


Basic Information

Item Value
RNA id XM_021571706.2
length 2981
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC110496053
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74210463 ~ 74221530 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATGTTTAGCGTGATGACGAGCTTGTTAACGCGGCACTTTTCCAAACTGACGCCTGGGATGTATTCTTTATTTTAATCGATGAGATCCAGTTTCTTTTGAGTACCGCTGCCACCATGTTTCAATATGCTTTGTGTTGTAGTCGCGACagacatatatatatagttaAGCAAACTTTATTATGCATGTTGTCAACCAGCACATTCAGTACATTAATAAGTGACATCATGGACCCCACTCCTGAGCCCAAGACCAGAGCGGAGGTTTGAAAGTAACTCTGCTACTTGGTCAGTGTGTGTATCAACATGGCAGAGGCCACGGACCTGATCAATTGTTCGATCTGTCTGGATCTACTGAAGGATCCAGTAACTATTCCCTGTGGACACAACTACTGTATGGAATGTATTAAAGGCTGTTGGGATCAGGACGATCTAAAAGGTGTGTACAGCTGTCCCCAGTGCAGGCAGACCTTTACCCCAAGACCTGTTCTGAACAGAAACCCTCTACTAACTGAGTTTGTGGAGATTCTGAAGAAGACAGGAATCCAAGCTGCTCCTCCAGCTCTCTGTTTTGGTGGACCTGGAGATGTTGAGTGTGACGTCTGTACTCTGAAAAAATTAAAAGCCGTAAagtcctgtctggtgtgtttagcctcttactgtgagactcaTCTCCAGCATCACTATGAATCGCCTGCATTTAAAAAACACAAGCTGGTCAAAGCCTCCACACAACTACAGGAGAAGATCTGCTCTCATCATGACAAGCTGCTGGAGGTTTACTGCCGTACGGATCAGCAGTGTATCTGTTATCAGTGTGAGATCGAGAAACACAAAGGCCATGATACCGTTTCCCCAGCAGTAGAAAGGATTGAGAGGCTGAAACAGTTAAGTGAGAACCAGGCCAGGCAGAGAAttcaggagagagaggtgaagataCAGGAGGTGAGACAGGCTGTGAAGTCACTCAAGTGCTCTGCACAGACCGCAGTTGAGGAAAGTGAGAGGATCTTTACTGAGCTGGTCCACTCTATTGACAAAACGCGCTCTGAGATGAAGGAACTGATCAGAGCCCAGGAGAAGGCTGAAGTGAGTCGGGCTGAAGGACTCCTGAAGCAACTGGAGCAGGATGTAGCTgagctgaagaggagagaggctgaGTTGGAGcaactctcacacacagaggatcacatCCATTTCCTCCAGAGtttccagtctgtctgtgtccctcctGGATCTGAGGCCTTACCCAGCATCACTGTCAACCAAATCTCATTTGAGGATTTACAGAAATCAATATCTGCACTTAAACAGCGACTGGAGGTTATATTCAAGGAGGAAATGGCCAAGATACCTGGGAAAGTGCTGATGCCAGCGACCATAAGTACAGAGGAATATGGTGTCCAGTTTGTGGATGAGCAAAGGTCTGAGCTCATTCAGAGGGTAACCATGGTGATGCCTATAGCAGATGAACTTCTTCAGAGATGCATGCTTCATAAAGAAATGTATAATACTATCCGTGATGCCAGGCCCAGCCAGGAACAGATGAGACTGCTGTACGAGGCCCTACACTCAGGAGGCTCTAAGGTGAAAGCAGCCTTTTATGAGATTCTACGGGAAAAACAACACTATCTAGTCAATCTAGCAACAAATCTTCATGATGTTCCACTCCCCGAACCCAGGATCAGAGAAGAGTTCTTGAAATATTCCTTACCGCTCACATTGGATCCTAACTCAGCTCAAGAGtgcctgtgtctgtctgaggGAAACAGGAAGGTGACAAATATTGGAAAGGCCCAGCCCTACCTTCACCATTCAGACAGATTTACCTACTTCGTccaggtgctgtgtagagagggtctgtctAGAGCCAGCtactgggaggtagagtggagtgggGATTCTGTTAATGTAGCCGTCTCATATAAAGGAATCATCAGGAAAGGAGACCAATGGAATGGCGTCGCTGCATTTGGACGGAATGATCAGTCGTTGAGTTTATACTGCTCAACCTCTAGCTGTAATTTCATGCACAATTGCTCTACAACTGTTATCACTGTCCCCTGCTCCTCCAGAGTTGGCGTGTACCTGGACCACACGGCAGGAACTCTGTCCTTCTACAACGTTTCTGACACAATGACTCTCCTCCACAGagtccagaccacattcactGAACCTCTTTATCCTGGGTTTACAGTTGGTCATGGATCATCTGTGAAGATACTGACACAGTGATAGAAGTAATGGAGCTTTCATATTAAACTCGGTATGGATTTAATCCATAACATTGTTATTTCTCTTTTTTTATAATCTTGAGAAGTTCTGAAAAATATGCTTAATGTCTCTGCTGATGGAGTGCTGCTGTTTTCCCCAGCTCTGACATAAACAATCTGTTATGTCCTGACTGCAAATCTGATGAACCAGGGTTTGTTGTATAAACACATGCATGCTGGCCTCTGTGGGCTGAGGAAAATAGTAAGCcatgagaaactcaaacaagGCCTAGTTCCAGTTTGGCAGTTAGCTCCTACCCCTTCAGTGTGCACAAGtttgacaggactggaaggatgTAAGCAATATGGAGGATGCTTCACTTGGCCTATTAGAAAAGCACATGGAGTCATCACCTATCCCATTCTTTTAGATCTGCAACACCAAAATGTTAGGGAAAGGGGAACACAATGGAATCAGGCTTATACATACAGTAGGTTACAGGATTCTGTCAacacaaaatcaaataaaatgttgtcACATCTGCCGAATACAATGTGtagccattcttgtgattgtgattttgccattgtaattgtttgtaaacttgtgtagttaaattaatctatgatcgtatgctatccatttgtttgtatgctgttctttgtttgacattttaatatttgattattaaccaatggTATTaagccactcttggccatgattacagacacctgtgtcttttgacactatataaacgagtcatcccgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207831 lncRNA upstream 32781 74173635 ~ 74177682 (+) True G183182
TU207811 lncRNA upstream 42457 74156622 ~ 74168006 (+) False G183177
TU207812 lncRNA upstream 42457 74157076 ~ 74168006 (+) False G183177
TU207810 lncRNA upstream 42457 74159335 ~ 74168006 (+) False G183177
TU207816 lncRNA upstream 42457 74163092 ~ 74168006 (+) False G183177
TU207904 lncRNA downstream 38843 74260373 ~ 74261170 (+) True G183226
TU208036 lncRNA downstream 216883 74438413 ~ 74438688 (+) True G183346
TU208046 lncRNA downstream 231008 74452538 ~ 74457151 (+) True G183354
TU208175 lncRNA downstream 509709 74731239 ~ 74732563 (+) True LOC110496107
TU208791 lncRNA downstream 531836 74753366 ~ 74753628 (+) True G184023
XM_021571685.2 mRNA upstream 11777 74178483 ~ 74198686 (+) False LOC110496029
XM_021571668.2 mRNA upstream 11777 74178578 ~ 74198686 (+) False LOC110496029
XM_021571660.2 mRNA upstream 11777 74179492 ~ 74198686 (+) False LOC110496029
XM_021571676.2 mRNA upstream 11777 74179492 ~ 74198686 (+) True LOC110496029
XM_021571609.2 mRNA upstream 70961 74126223 ~ 74139502 (+) True LOC110495996
XR_005037864.1 mRNA downstream 298246 74519776 ~ 74529598 (+) False LOC110496089
XR_005037863.1 mRNA downstream 298246 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA downstream 298246 74519776 ~ 74529599 (+) False LOC110496089
XR_005037866.1 mRNA downstream 298246 74519776 ~ 74529599 (+) True LOC110496089
XM_036955511.1 mRNA downstream 438829 74660359 ~ 74732682 (+) False LOC110496107
TU206688 other upstream 585945 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 600226 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 630388 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 868186 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 308119 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 490051 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 664568 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 815722 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 865092 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile