RNA id: TU208362


Basic Information

Item Value
RNA id TU208362
length 4875
lncRNA type sense_over
GC content 0.45
exon number 4
gene id LOC110501892
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74241237 ~ 74433222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGTCGGACGAGCTGAGGTGTTGGTACCAGCGCTCATCGGGCAGTCTAAAGGAGAGGAGTCACTGTGGCTCCAATGCGTCAGACAGCGGCTCGTTGCAAGGCACTCTGGGACACGGACGAGGCAACAGGGTGGGGACGCTCGCCAAGGGATCGCCAGCGTCCCCTCACAGCCAGAGGAGTGTGACTCCCTCCAGTGAACAGGCTGCCACCCCCATACCCCCCTGCAGCCCACAACACATCCTCAACTGGCAGAGCGGCGGTACAGCAGACAGCTCTCCTACTGAAGACGTGTGTCAGTCTCCCCCTCAGCCCAGCTCTGAAGCATAGAGgtcatTCAATGATAGCTGTTTCCTCAGCAGTCCTCTGTGTTCAGAGCTGGCAGATGTCCAGTGGTACGGACACGACAAGGCCAAACCTGGAACCCTGGTCTGACctactgaccctcaacactgatCCTTAATGACACAACCTCCAACATCTCAACTGATCCTTACAGCCCCcaccaacctctcctccagtgctGACTAGATTGGCCTTATCATGGGCAGGAAACCCTCATCCATTCCTCCCTTCATCCATCTTTCCCTTTATCAGTTTCTGTGCATATCGGGCTTGGCTGAACTAGGGGTTCTAGGACCAACACGACTATTGCTGTGGAACAGCCAACCATAGCCTCCGATCCTGAACTCTGACCTTTAatccctgaccctgagtctgctcCAGTCTGAGCCCAAGGATAACCAGGAATGGGCaaggggggaggaggggtaaACCCAGAATACACTCAGCCCACCAGGCCCTGTCTCATATCTACCCCTGACCCAAGTGTGCTGCCAGTGTGCTCCCATGTGTTTTGGCTCATGTTCTGGACCTTTGTGTGTGTACGCTTGATCTGCTAGGTTCATTCAtttcatgttttatgttttagTTTATTTCTCTATCGTtttctacaacaacaacaacaaaatgcgGGAGAGACTCGATTCACCCCTCTTTATGAAAACCTTCAGAATATGTTTCACTCTTCAGAAAAACTACAGAGTGGATTATTGGAGAATTATAGATTATCTGAAAGACTAGGCAAACATTCCCAAAAATCCTAATCCCAATCCCAACTCCTATCCCACAACCAAAGATCCATCTGGCTGACCAATGGCACCAGTCTCATGGGCACACTGGGAACACTGGTTTATCATACTGGGAGTTACACCCCACAATACTAGGAGTCCTCAAAGGAACTTAAAGACTGATCAATTCTACTGGGATCCTGCTCAGCACGTCTACTGGGATGTCAGTAATCTGAACTGGTAGTGTACAACAGCCAGCCACACTGATCAACTAGTTTCTTGTACTGGGATGATCCACACTTCTACTGAGCAGTGAGCTCCTGGACTGGGATGTTTTGCCACTACTGTATACTGGGGGACTGTGGTCAGCTGTACTGGGAGACTATGGACAGACTGGGGGCCCTGCACAGCCAGATCAGAGATAGACGGGGACAGACTGTGCCACAGGCCACAGACACTTATTCAAGGTTTGGGCCCTGAAATGCCAAGCCACAATATGCAAGGAATCTCATTGAAAGCCAATGTCTTGAGTTTGTGATGGTTGAAACTGTAGCTATATGTGTAGCAGTTTTCAGGTTAAGACCACATATAGTTTGGGGTGTTTATTTCCAATCATATCTGCAGGCTTTCAGTGGTCTATTTCATCTGGATCAACCCCTTCGTTTCACTTCCTGGTAAGAAGTGAAAGCTGATTGGATGCTTAGGACTGTGTgtgtctcccactcctctctctctctggtgatgGGCGTATGCTGTGGAGCTGATCGATCACACAGCTGCAGCGAAGGGCACTCCCCTCCTTCTATATCGAGCTGCGCCTATGATAAAATTGGTGAGATGTTAAACACTTCTCGAGGCGTTGTGATATCTGACTCTCTGCGCAGTCCTCTAGTCCTCTGTTAAAAATGGGAGGCAACCCATATTTAAGGACCAGTCTGTCTCTGTGACATCGATCTGTCTGTCCAACTCCACGATTGGTCATTGTCTCAGACACTAGGGTAGTATATTTGAGGGTAAACATTTAGATCAGGCATGAGGCCTGTAAACTCCAGTGGGTACTCTTTTGTACAGGTCACTATCTCAGGCTATATTCTCTCTGCCTAAAGTCTCTCCTATCAccagtcagaacacacacatcttgtttgtggacacacacacttttctcatCAGTGCCATCTATGGTGGTGCTTAAAGTCTGTACTGTAACCCAGCACTGAAAACAGCCACTCACTAAAATTACAAACCATATAACTACAAATCCCACAGGGCCCGGTTCCTAGTCTAGCAGAGGAAGTGGCTGTGTTCGAgagcatcaaaactatgatatatCATGGGTacattgtgactgactgactgatctacaaataataataagttatttatgatgcaaggtgatttgtagctaagtcagtcagcagtcaccTGCACTGTCGGCTGCAATGTCGAACAAACCCAGTGTCTGCTATATAGAGAACCTGCTTCCCAGAGCCAAAAGAACATCAGGGAGAGGTATATACACCAATCGGAGCTGGATCTGCTATGTAGGGTGTTGACTATTGTAACTGTGTCAAGTATTCAATCTAAGTGTTGTTACCAGAGCACAACATACACAGTTGCACACTATGTATGAAGACTATAGGCCTACTATATAGAGAACCAGTTTTCATCTAGTTCTCCTCCTGGCGTTTTGATACATATAAGGGGATTAAAAACATCTGCATAACAACACATTTACGATGTAAAATGTAAATCCAGACTTTATATAAGAGTAACACACACGTCTAGAGTATAAATAATGTCACCCCAGCACCAGAAGGGTGTTATATCATTGTGCTTTTATTGTGCCCCGTTCAAGagaactgggaactcagaaatctcTGACGTcggacttcagtgcgttcaagacaactgggaactcggaaatctccgacGTTGGatttcagtgcgttcaagacaactaggaactcagaaaaaaaacaagctccaactgggaaaattTGTTTTGAACGGTCCtccggaattccaagtcggaaactctgGGATCATCCTAAAGCTCCGACttctccaacctgaagatcactgtcATGATTTGATCTCGTTTTATtatgagttcccagttgtcttgaaagcaccattacTGTGTAGGTATTGTCATCAATGAACATCAATGAACTGACCTTGGTTTAGTAATGGAGGCCATCACCGTATCCCGCTGTAACACAGCTGTGAGAGAACGTGTAGTTTCCATATAACTCTCGCTTACATAGACCAACTCTTGTCACAAACAAATTCTTAAGCAGGTATTTTAAAGCACACCTTCTGGTTTTCTGCTGGGGAAAAGAAGCCTCTGCCCAACGTTGTTGTAATGCTGTATGTGTGGACAGTGTACAAAACCCCAAACAAAGCAAAGAATTGCAGTCCTTCTCTCACAGCTGCCTGTGCTTTGTAAAGGCTTATATTCTCCCTTGAgtcttaaaaaaacaaacatctgaAAACATTGTTTATATGTTGCACAAAAATCTGACCCCATCAAATTAGTTGAACTTGCACCAAGCGCCATGGTGGACTGAATTGCCTTCAGTTTGAACGAGTTTCACGGCCCCCAACCCTGCCACACTGCAAAGTCCTGGTAAAAGTGCTGTGTTTCTTATGAACTTTGAACTCCTGTTGTTTACCTCTTTAGAACCACATCAGCTAGGCTAAGGCTCATTAGCCTGACCATTTCCCATGGATGAGACACCTCTGCTAGCTCACACCATTCCATGCATgctcaaaaaaacaaaaatactccCCTTCTCCACTCACCTTTTCCACCTAGACAGAGAAGCATTCTATATCCATGACAACACACCCAAACCCCCAGTTTGACTTTTGACTCCTGGCCCCTCTGACCCTTGAACCCAATGTGGTGATGATGTGTGCTGTACCCTCTTCTAGGTCCCCTATTCCCATACTGTCTGTACTCCatagaaacataaacatttttaTAGTTAAAGATGAACTCTTTTATCAACCTCTTTCCTGTACGTACCTGAGTGGGGTTTTTAACATTCACTGTAAGCCTGAGTGGGGGTTTTAACATTCACTGTAAGCCTAAGTGGGGGTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTCAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATTCACTGTAAGCCTAAGTGGGGTTTTTAACATAACCATGTTCCTTTTTATATGAACCAGTATTAGTTGTTTCTTTGGTTTTTGTCTCTAAGTTCTGACATAGTAAAAATCCTTTCAGGTGCTATATGATGACCAGTTACCGCTTTGTCACGTAGAATATAGACTCTCCTCATTGTTGTCAATAGTTTTAATACGTTGTGCAGAGCAAAGACCATCCCTTTAGGCAGTAGGACACCCATCCACCAGACCATAGAGCATGTAACCTGATTTTATTGGTTCTCTTCAACTGTAACCTGACGAAAAAAAGGTATTGTAGAAAAAAACTATGTGGAAttgacacaaaaaaatacagaattCCACAGTTAATTTATTCTTTTTTCTATTAAGACTTTGTATAGGAACTTTCCATTTTTCTAAATGGTGTTGTTGGCACCTGATGATGGATTGTCCAGATGAGAAGAATTGGTGGTTTTTCAGATTATGAAAATAAATTATTGCTGAATGTTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208302 lncRNA downstream 19588 74215317 ~ 74221649 (-) True G183601
TU208418 lncRNA downstream 42567 74196872 ~ 74198670 (-) True G183672
TU208337 lncRNA downstream 96451 74144585 ~ 74144786 (-) True G183631
TU208303 lncRNA downstream 98184 74141037 ~ 74143053 (-) True G183602
TU208298 lncRNA downstream 120969 74119058 ~ 74120268 (-) True LOC118941541
TU208463 lncRNA upstream 34570 74285609 ~ 74286314 (-) True G183714
TU208402 lncRNA upstream 81985 74333024 ~ 74334618 (-) True G183656
TU208505 lncRNA upstream 104611 74355650 ~ 74369807 (-) True G183754
TU208514 lncRNA upstream 110787 74361826 ~ 74362726 (-) True G183760
TU208573 lncRNA upstream 189571 74440610 ~ 74440876 (-) True G183817
XM_036955486.1 mRNA downstream 73887 74157073 ~ 74167350 (-) False LOC110496015
XM_036955490.1 mRNA downstream 73888 74161055 ~ 74167349 (-) False LOC110496015
XM_036955479.1 mRNA downstream 73897 74164132 ~ 74167340 (-) True LOC110496015
XR_005037845.1 mRNA downstream 100361 74119066 ~ 74140876 (-) False LOC118941541
XM_021571622.2 mRNA downstream 115028 74122283 ~ 74126209 (-) True LOC110496007
XM_021571730.2 mRNA upstream 201493 74452532 ~ 74458312 (-) False LOC110496063
XM_021571763.2 mRNA upstream 201493 74452532 ~ 74473027 (-) False LOC110496063
XM_021571755.2 mRNA upstream 201493 74452532 ~ 74473040 (-) False LOC110496063
XM_021571739.2 mRNA upstream 201493 74452532 ~ 74473298 (-) False LOC110496063
XM_021571768.2 mRNA upstream 201493 74452532 ~ 74473300 (-) False LOC110496063
TU208238 other downstream 130446 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 247692 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 564814 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 895390 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1162858 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 479833 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1355188 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1626320 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1734120 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1842131 76093170 ~ 76099850 (-) True adm2b

Expression Profile