RNA id: XM_036955509.1


Basic Information

Item Value
RNA id XM_036955509.1
length 1892
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110496063
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74452532 ~ 74473316 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTCAGCATTAATCTATATTTTCTATGGGTcccgagtgtgtatgtgtgtgcagttGAACAGTTTCGAAGGAGAAAGCAGAATAGCAGGAACACCTAAACGGAGAAGTGATCTGGAGACGCACCAATGAGATCGGTGTGTGGAcacaggtctgtctctgtctctgggcaGGAGTGTAATGGCCGAGCCGGACTATCTGGAGGGGGACTGTGAGGAGCTGATCAAACCCAAGAAACTGTTGAACCCAGTCAAGAGCTCCAGAAACCACCAGGACCTCCATCGAGAACTCATGATGAACCAAAAGAGGGGCCTAGCTCCCCAGAACAAACCAGAGCTCCAGAAGGTtctggagaagagaaagagagagcaggtccTCAAGGCCCAGAGGGAGGAGCAGGAGGCACACACCAAGAGGAGCGACCTGGAGATAGAGCTCATGAAGAGACAACAGAAACTAgaacagCTTGAGTTGGACCAGCAGAAGgatgaggaggagcaggagaacaCCCCTGAGTTTGTGAAGATGAAGAGCAACCTGAGAAGGACCAAGCAGGAGGTCAATGGGGAGGAACTTACCACTTAGGGAGCCacgggtggtgtgtttgtgtgtgtggaaaaaTAGAAAGCAACTGTGTACTGTACATAGAGGAGTGTTTGTGCATATGTGagggtgtgtgcctgtgtgcagaCTCAATGGCACATGTTATCTGATATGGACTTCCTGATTTATCTGACCCTGTTGAGAAAGACTTAAAGACTACAGACCAATTTGTCTGCCCACTACAGACCAGCAGTACTAcatacctctctgtctgtccactaCAGTACTCCCCTCACCACAGTACTCACCTCACCTCAGCCAGAGAGGAGCCACCTGTACTCACCTCAGCCTCTCCACTcaacacacagggacagagaggagacttaACATGAATGTGCTACACGTGAAGAACAGCCAGTCAATCTTCTGGGGAGGTCAGATGCAGGGACCAACAGAACCAACACAGAGTTTCcattccctctgtctcctgtccACCCTTCTCTCCAGCCACAGAAAGCTCtcctttatgttgttgttgttttcattaTCAGAACCCAGAATGGAAAAGCGGACACTGGATGGACTCTTGAAGCTGTGTTTTGTAAAAATGCCAAATTAATGTACTGTTGTTATTTATGTTTATGTTTTTAGTATTTTAGCCCCATGTAGGGAGATATAGACACCTCAGATTAGTTTTACAGCTCAGTGTGTGGAGCGTGAACAGAGGGATATAcgacaaagcaggatcaatgagtcaGCCAGCTAACATTGATAAACCAGAAATAACTTTGATTTTCTGGATAATTAAGAGATTCTAATTTCCGatatgtgtttttggttgttAAGTCAATTAGAGCATGCCATTTCAAAAGTATAAAAAAAAGTaagttatttcagaatatttGGGCAAGTTAGCTGGCCAAGTCATTGATCCTACTTTGTAGTATATCCCTCAGGAGAGGacatgtgtgtggttgtgtgaaaaaaacacccaaatagttatttttattttcaacATGCCACTTCTTCAGCTAATGCTATTTGAAGCAATACTAGAACTCCCCAAAGTGTGCAAGTAGTCTTTTATTTCTATAATTCTagtaaatagattttttttaatgaataaagGGGATTTTAAACTAGTCTTATTTTGGATGTGTGGTCGGCAGAGATGATGTCATATACCAGGAAGTAAGTGCACATGGGAGCCAACTTTTCCAATAATTGCATTTGGTTCTATGCTTCGTTTATGTGCTTCTCTGAATCTCTGGGTAAGATTGTAAGacaatcctctcctctgtccctctgcagATTTTAACATCTTATTTTAAATAAATATCATTTAACTGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208511 lncRNA downstream 1138 74450963 ~ 74451394 (-) True G183757
TU208575 lncRNA downstream 10629 74441620 ~ 74441903 (-) True G183819
TU208573 lncRNA downstream 11656 74440610 ~ 74440876 (-) True G183817
TU208505 lncRNA downstream 82725 74355650 ~ 74369807 (-) True G183754
TU208662 lncRNA upstream 90620 74563922 ~ 74564654 (-) False G183903
TU208661 lncRNA upstream 90867 74564169 ~ 74564654 (-) True G183903
TU208588 lncRNA upstream 95658 74568960 ~ 74594420 (-) True LOC110496093
TU208730 lncRNA upstream 193643 74666945 ~ 74668467 (-) True G183969
TU208766 lncRNA upstream 240828 74714130 ~ 74749977 (-) True G183998
XM_036955502.1 mRNA downstream 19310 74241237 ~ 74433222 (-) False LOC110501892
XM_036955504.1 mRNA downstream 48647 74241237 ~ 74403885 (-) False LOC110501892
XM_036955499.1 mRNA downstream 92426 74241237 ~ 74360106 (-) False LOC110501892
XM_036955497.1 mRNA downstream 103180 74241237 ~ 74349352 (-) False LOC110501892
XR_005034539.1 mRNA upstream 28112 74501414 ~ 74508105 (-) True LOC118937295
XM_021571790.2 mRNA upstream 59983 74533285 ~ 74594426 (-) False LOC110496093
XM_021571925.2 mRNA upstream 883269 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 1105548 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 1111255 75584557 ~ 75585136 (-) True LOC118936395
TU208238 other downstream 341741 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 458987 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 776109 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1106685 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1374153 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 257570 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1132925 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1404057 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1511857 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1619868 76093170 ~ 76099850 (-) True adm2b

Expression Profile