RNA id: XR_005034539.1


Basic Information

Item Value
RNA id XR_005034539.1
length 1986
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118937295
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74501414 ~ 74508105 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATATCCAGTGGCTCTCCAGGAGAAGAGTTGGCCCATGCTAAATGTAGGGCTTGTTTTCTGATTCATGGTAGTCTTGTGGAAGTGCAGAGCAATGCCCTGAATTGACTGAAGACCCCATGATGGTGGCTGTGTGCTGACCGACAAGCAGTGGTGGAAATGGTGAGGGCCAGGAATGACATACAACTGTCTGAAAAAAAGCAGGCCATTGAGGACAATGATGACACCTTTGCCAATATTGCATCCATCAGCCTACCACCAATCACCCGCCTTTTGAAGAGGCACCAGGTATCTATGAAACACATTTACCTGGTGCCTTTTGAGAGAAACATCAACCGGGTGAAACAACTCTGGGCAGAGTGTGTTCAGagggTGATGGTGCTTGATGCTGCTGTGAACCATCACAATAATGTTTCTGTTGATGAAGCGGGCTTCAACCTGGCCAAAACTCAGTAACGTGGGCGGAACCGCATTGGCCAACGGGCGACCGTCCAAGTACCTGGGGAAACATCTCCATGTGCACAGCAATCTCTGAAGTTGGTGTGTTAGGATGTAAGCCGTTGGATCCTATAACACTGCACACCTCATTGTGTTTCTCAATTAAATTGAGCAGGCCTGTCAAGGTGAAGGGGTTAcatatgtcattgtgtgggataatgtcaggttccactaTGCAGAGGTGGTTCAGGTGTAACCGGTGCTATACTGCTCcactgtaactctgcgttgtgtgtggttgattgagACTATAGACGTCGACTTTGGAGATCAGGTTGTTTTAATTCAGCAGAATTCACCCTCTGCATCTTGAATCCAAAAGAAAATAAAGCACTTATAGAACACATATGTTCTGCGAATCAACACCTCTTTCTACAACTGATGCACAATACAAGGGactgggatcattcgaggagctagccatcgttcacacatacaatagcctgctaataccatagctagctattaaccacatgttgaattcagaatgtTAATATCATCCTGaaaagtacaattacaagtgcATCTTAACAATACCATCCACTTATGAGTAACATCTAAATATACAacattattcatgaacaaaacTCTTGTGTGTGACTTTGTACTTAAAGGAAACAAACTTTTTTGAAGATGACAGAAAAAACATGCTTACCTCTCATAGTGTatcaaaatgatttgagcacGCAAGGCAAAGcgtaagtacacactcccctactcccaggatgcaggcatgcataaTAACAAATCAACATGCCATATTAATATATGAACCTGGTTAAAGTATTTCACAGCTGTTACACATGCATAGTTTCGGGCCCATCCCTGATTCATGGCCCATAAACCTGCCTAcatactctcctttcctcaaCCGTATTGAGGATTTTTTTGCAGCATAAAGATGGAAGGTGTACAATCGCCATCCCCATGAACGTGCCACCCTCCTCCTGGTCATGGATGAGGCATGCAACAACATCAACGCAGACCAATGTCAAGtgtattgcctaatgtgaaaacTGTGTAATCTACTGTAATTTACAGTGCTGTCGCATATTACTTTCAGCATTGTAAGAGTGATTTGAAACATGTTCTGTATCTTGGATTGTTTGCTATTGGATAAACTAGTTAAAACAACTATATTAAAAAGACATTATGTGGTGTTTGTAACGGAgacgcagagagtcaggaagcaggtgcagtctGAGTTTAATCGGAACAAACATGGAGTTAATACAAAAATAGAAGTAGAGTCTAAACAGGATGCAATACTACCTAATGGGTGATACAACGGAGTGCTGGATAAAGGGGAAGTAATCAGGGtgatgatgaagtccaggtgtgcctcatgatgggttgccaggaccggtggttcgCAGCGGAGCAGGGGAAGTAGACGTGACAGTGTTGGTGATTAAACCAATGTTCTCATTACATTTTACAATACACGTATACTTTGAatcaatggttgtgtggtgaAAGCTGCCCACGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208511 lncRNA downstream 50020 74450963 ~ 74451394 (-) True G183757
TU208575 lncRNA downstream 59511 74441620 ~ 74441903 (-) True G183819
TU208573 lncRNA downstream 60538 74440610 ~ 74440876 (-) True G183817
TU208505 lncRNA downstream 131607 74355650 ~ 74369807 (-) True G183754
TU208662 lncRNA upstream 55817 74563922 ~ 74564654 (-) False G183903
TU208661 lncRNA upstream 56064 74564169 ~ 74564654 (-) True G183903
TU208588 lncRNA upstream 60855 74568960 ~ 74594420 (-) True LOC110496093
TU208730 lncRNA upstream 158840 74666945 ~ 74668467 (-) True G183969
TU208766 lncRNA upstream 206025 74714130 ~ 74749977 (-) True G183998
XM_021571746.2 mRNA downstream 28098 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 28112 74452532 ~ 74473302 (-) False LOC110496063
XM_021571768.2 mRNA downstream 28114 74452532 ~ 74473300 (-) False LOC110496063
XM_036955510.1 mRNA downstream 28114 74452532 ~ 74473300 (-) False LOC110496063
XM_021571739.2 mRNA downstream 28116 74452532 ~ 74473298 (-) False LOC110496063
XM_021571790.2 mRNA upstream 25180 74533285 ~ 74594426 (-) False LOC110496093
XM_021571925.2 mRNA upstream 848466 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 1070745 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 1076452 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 1087261 75595366 ~ 75605880 (-) False LOC110496186
TU208238 other downstream 390623 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 507869 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 824991 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1155567 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1423035 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 222767 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1098122 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1369254 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1477054 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1585065 76093170 ~ 76099850 (-) True adm2b

Expression Profile