RNA id: XR_005037863.1


Basic Information

Item Value
RNA id XR_005037863.1
length 3519
RNA type mRNA
GC content 0.48
exon number 10
gene id LOC110496089
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74519776 ~ 74529599 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgacacatcgccccagatcatgacggaccctccacctccctccatatcgatcccgctccagagtattgtcctcggtgtaacgctcattccttcgacaaaaATGCTCATTCCTTCCAAAAtgttgatctctttctctccctctcctctccccattctctctctctcccagtgtgtGAGTCGTGTCTGGCAGGTACTGAGCCTGCTGTAGGTTATCAGTTTAAGTGGTGGAATGTTGGACCAGCCAACATGAAGACGTCCTGCATCAACGTGAGAAGCTCCAAGTGTGACGGTATTAACGGTTGGGAGGTAGCGGGGAATCATATCTGCAGTGGCGCACGGGGCTCtgataatgactacctcatcctCAACCTCCACGTACCTGGCTTCAAgTGCGTCAGAATGTGAACGGCATGGTGCATATCTACTCCATCTCAGTGAGTAACACGGTAGACGGTGTGTCGTCAGAGTGTCAGGCCTGTGCCCTTCTCTCCCAACCCTCCGGCTCGCTGTGTGtcccctgccctccaggacactacatacacacactcacacacacaccagccagtgCACAGAGTgccccccaacacacacctcaCCTCACATAACACCCAGAGCCCAGAGGTCTGCAAACCCTGTGGACCATCCAGCAAGAgtaacaaggtgtgtgtgtgtgtggacgtgtttagcTATCCTTGCGGAGACccgaagtccccacaagaatagtaaacaaacaaaaattggaCCAATTGGGGAcacaatgctatttctagggggtttagggttaaggttagagttagggttagaattacgtttagggttaggagctagggttagggttaaggttaggtttttgggttagggttagggtaagggtaagaaTACGGgtgagggaaaataggattttgaatgggactgaattgtgtgtccacacaaggttagctgtacaagactgtgtgtgtgtgaaggtgggTCGAGCTTGGTGAAGAAAAGTGTGTGTCCATTGTTTCTTCCACAAGTTGCATAATAGTGCACAACtgaatgtttgtgtgtttttCCTACTCTGATAACAAAGGGTCTCAGAGTTTTGACTATAGTTCTCTCGGCTCTGTTGGAACACTGATGAACAGACCCAGTTTTACCTCTAAAGGAACTAAGTACTACCACCTCTTCAACATCAGCCTCTGTGGAGAGGATAGGAGGGCTGTGTGTACAGATAATGTGACTGTGCTATCCAGCGCCGActctcagagagagacaggggaatcAGCCAATGTGGTGGAGAGTTTCATCTGTCAATCAACCATCATCCCCTCCAGTGGGCGGGGCTTCCGCACAGCACTATCCTCCCAGTCCATCAGCTCAGCAGACACGTTCTTGGGACACGCTGTATGTGTAGAATGAACCAAAGCTGTGTAAAGGAGGGGTGTCCCTCCCAGAGAACAAGACCTCTCCGTGTAATAGCATGGACTTCTTGGTACAGATGGGGTCGGCGATAGGAGCATTCATTAGAAAGTACCTAGTacctgtaatggattacatttagaaagtaaccttcccaaccctgttGATGGCTGAATGTGTGTAGGAGCACCAGTGGCCTCTGGATGGAGTGAAGGCAAGACCAGACTTGTTCCATAAGACCACCAACAAAGTCCTAAATGCAAACTTCTACCATTCTCTAGGGCAACCTCGGCATGTGAAGCGGGTCGTAATGTGGTGGTGACACTTCGCTGTAACTCGGATAGGAGCTCACAAGGAGAACTCAGGTACCCAgTCAGTGTCCGGCTGGGAGATGTGACTGCTGTACCTCGAGGGCGTGTCCTCAGTGTACCGCCACGGACTACCACCAGATAGACAGCCTGCAAGGgagatgtAACATGCTGTACGTCTGGAATGAACCAAAACTGTGTAAAGGAGGGGTGTCCCTCCCGGAGAACAAGACCTGGCCGTGTAATAGCATGGACTTCTTGGTAAAGATGGGGGCGGCGATAGGAGTATTCACCGCTGCACTGCTCTTCATCACCTGCTACTTCTGGAAGAAGAACAAGAGGCTGGAGTATAAGTCCTCTAAGCTGGTGATGTCGTCCAATAAGGAGTGTGAACTGCCAGTGGTTGGACAgctgtgatggagggagggagaggtggaggacgaGGTAGTCTACTCCAAAAAAAACATCACTGTTACGCAAACTCAAAGCCATCACATCTAGGGGAAACAGAGAAAGTTATGAAACTGAACAGTTGAACTACACACAGTCAAACGGATTGGTGTTGGGGGTgaagaaagaggaaagagaacagggagagagaccaACCCCTCAGAGACTTTTTCAACAGATCACCCCTGTTGAGTGTTTGAAACCTTAACATACAtactacaggaggttggtggcaccttaatggGGGAGGAGGGTTTCGTGGTAAAGGTTGGAGTGGAATAGCatgaaatacatcaaacatggtttccatgtgtttgatgtcagtccattcgctccgttccggccattactatgagctgtcctcccatcagcagcctcctgtgatacatacacacatgcagagTACACACACCCCCTGAGAGAACACACACCCATAATGTACGCGCACTGACACAAACACATGTGAAAGGACATTACACCCTTCTTTCATTATCTCTGGATTGTTGGTATATGGATGGCATGATTTAAGagggtgtgtatggtgtggtatATGGGTGGTGTAATTTAAGagggtgtgtatggtgtggtatATGGGTGGTGTAATTTAAGagggtgtgtatggtgtggtatatggctggCATGATTTAAGagggtgtgtatggtgtggtatATGGGTGGTGTAATTTAAGAGGGTGTGTATGTGGTATATGGCTGGCATGATTTAAGagggtgtgtatggtgtggtaAATGGGTGGTGTAATTTAAGAGGGTGTGTATGTTGTGGTATATGGGTGATGTAATTTAAGACGATGTGTGTGGTATATGGGTCGTGTAGAGTCTAaatgtgggatgtttttgtgctaTTTTCCGTCACTCTGTTATCAGGTTGCTTTGGTGGCCATGTTGTTTTTATTCAGGTGTTTTGCCATCTGAGACCAACTTCACACCAACCCTTAAACTAATAATCTGGATATGAGGAAAGAAAGTGTTCCACGTGCCCTCTGAAAGGCTTGGTGGGATGTTCTTTCTGTCCAATCCTTTGAGATAGAAGTGCACACATAGCCCTAGATACCCGGccgacttacacacacacacacccttgtacAGTCTCATCTCAGTCTGACCAGCACCGTCCGTGAGCAGTGACACATTTGATCTGTCTGGTTTGTTTTAGGGGGGCTGTGTAGGCTTTGGGATACCATGGTGATGTTGAAGAGGGAGTGTCCCTCACCCTCTCCTAGTTCAGTCAGGCGTGGCGATGTTACATTATGCATACGATGATATGATTCTGACCTTCTTTCTGTTATTTCAAGTTAAATAAATTGTTTGTGTACACTTTGAATCTGTCCCTTCACTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208046 lncRNA upstream 62625 74452538 ~ 74457151 (+) True G183354
TU208036 lncRNA upstream 81088 74438413 ~ 74438688 (+) True G183346
TU207904 lncRNA upstream 258606 74260373 ~ 74261170 (+) True G183226
TU207831 lncRNA upstream 342094 74173635 ~ 74177682 (+) True G183182
TU207824 lncRNA upstream 352671 74163092 ~ 74167105 (+) True G183177
TU208175 lncRNA downstream 201640 74731239 ~ 74732563 (+) True LOC110496107
TU208791 lncRNA downstream 223767 74753366 ~ 74753628 (+) True G184023
TU208824 lncRNA downstream 252360 74781959 ~ 74782190 (+) True G184055
TU208829 lncRNA downstream 255833 74785432 ~ 74785668 (+) True G184060
TU208841 lncRNA downstream 262807 74792406 ~ 74792739 (+) True G184072
XM_021571706.2 mRNA upstream 298246 74210463 ~ 74221530 (+) False LOC110496053
XM_021571714.2 mRNA upstream 298246 74211135 ~ 74221530 (+) True LOC110496053
XM_021571668.2 mRNA upstream 321090 74178578 ~ 74198686 (+) False LOC110496029
XM_036955511.1 mRNA downstream 130760 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA downstream 130764 74660363 ~ 74732682 (+) False LOC110496107
XM_021571821.2 mRNA downstream 298668 74828267 ~ 74890826 (+) False LOC110496116
XM_036955513.1 mRNA downstream 380868 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA downstream 380868 74910467 ~ 74962990 (+) False LOC110496126
TU206688 other upstream 895258 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 909539 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 939701 73576765 ~ 73580075 (+) True LOC110501876
TU206530 other upstream 1177499 73341380 ~ 73342277 (+) False G181995
TU208054 other downstream 50 74529649 ~ 74535026 (+) True G183361
TU208178 other downstream 181982 74711581 ~ 74714114 (+) False LOC110496107
TU208835 other downstream 356499 74886098 ~ 74886500 (+) True LOC110496116
TU209105 other downstream 507653 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 557023 75086622 ~ 75087407 (+) False LOC110496136

Expression Profile