RNA id: XM_021571790.2


Basic Information

Item Value
RNA id XM_021571790.2
length 4820
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110496093
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74533285 ~ 74594426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctcgcaGTATGACTCCACTGAGGGATCAGGAGTAAGAGAAACTCGTCTCAAGTGCTCAAATAGCTGCAAGATTTGCGCACTTCGCATTATAAATAAGGTTACTCTGGGGATGTAGCTATGTATCATGACCCAGCAGCTCTTTGGCTTGTCTGTTTCTTGTCAGAAGGTCTGATGTCCAGACTCTGTGCTCTTCCATGTATGGTCCAGTGGAACTCTCCTTGACCATTAGATGGACTACAAACAGTTCCAGCAGTTACTGCGGCCGCACCTCAAAACTCCCTTACCTTGACCCTTGACCCCTTAGCTTTAAACCCTCACCCCTGACCCATACTCTTAGCCTCTAGCCCCTCACTCCTCCTAATCCTTAACcttactccccctctcccttccctccctccctcccttccttcctctcatctcttgtcctctcctgacctttcctctcctcccctctccaccatgTTATCCCGTATCACCACAGTCCTCTTAGCTGTTTTGTGTCGATGTGTGCTGGTGTCTCTCGGGGTGGACCCCCCTCACCCCCGTCGCGAGATCCGGATCGAGGGTGACCTGGTTCTGGGGGGGCTGTTCCCAGTCCATGAGAaggggggagggatagaggagtgtgGGAGGGTGAACGAGGACAGGGGGATCCAGAGGTTGGAGGCCATGCTGTTTGCTATAGACAGGATCAACTCTGATCCTACTCTACTGCCTGGAGTCAGTCTGGGAGTTCACATACTGGACACCTGTTCTAGAGATACATACGCACTGGAACAGGCGCTGGAGTTTGTACGTGCGTCTCTGACCAAGGTGGACGATACAGAGTTTATCTGTCCTGATGGATCCTACGCGCTACAGGACGACAGTCCCCTGGCAATCGCTGGAGTTATAGGAGGATCCTATAGCAGCGTgtctatacaggtgGCCAACCTACTGCGCCTCTTCCAGATCCCTCAGATCAGCTATGCCTCCACCAGTGCCAAGCTCAGTGACAAGACGCGCTATGACTACTTTGCCCGCACGGTGCCCCCTGACTTCTACCAGGCCAAAGCCATGGCAGAGATCCTGCGGCTGTTCAACTGGACCTACGTGTCCACGGTGGCATCAGAGGGAGACTACGGAGAGACGGGCATAGAGGCTTTCGAACAGGAAGCACGTATGAGGAACATCTGCATCGCTACCTCTGAGAAGGTGGGGCGCTCTAACGCTAAGAAGTCATATGAGGCAGTGATCAGGCAACTCCTCCAGAAGCCCAATGCCCGCGTGGCAGTTCTCTTCCTGAGGAGTGATGACGCTCGAGAACTCCTCTCTGCCGCCGCACGACTCAACACCACCTTCATCTGGGTGGCCAGTGATGGCTGGGGGGCACAGGAAAGCATTGTCAAGGGCAACGAGGCCACGGCCGACGGGGCAATTACCCTGGAACTGGCGGCCAATCCCGTGCCGGCTTTCAACCGCTACTTCCTGTCTCTGGATCCAATCAACAACCGCCGCAACCCCTGGTACCGGGAATTCTGGGAGCAGAAGTTCCAGTGCTCACTTggcggaggaggaggtggggcaGGAGGAGTAGGGTCAGGGGGGatggtgtctctctccctccctccctgtgagAAGGGTGTGTCGGTGGATAATAGTAACTTTGAGCCGGAGTCCAAGATCATGTTTGTGGTGAATGCGGTATACGCCATGGCCCACGCCCTCCATAAGATGCAGAGAACATTGTGTTCCAACACCACCAAGCTCTGTGACAGCATGAAGGCTCTGGATGGACGCAAGCTCTACAGAGACTACCTCCTCAACATCAGCTTCACAGctcccttctctcctctcggCAGTGAGACTGTGGTGAAGTTTGATCCCTATGGCGACGGGATGGGACGTTACAACATCTTCAGTTACCAGCGCAACGCTGATCGCTATGGCTACGTGCCCATCGGCGAGTGGGCAGAGACTCTGAGCCTGAGCAGTGACCTGATTCGCTGGCCAAGGGAGGTGGTGCCCCCATCCCAGTGCAGTGACCCATGTGCCCGCAATGAGATGAAGAAGATGCAGGctgGAGAGTACTGTTGTTGGATCTGTACTGCATGTGAGGCTCATGAGTACCTAGCTGATGAGTTCACCTGTTCGCCCTGCGCCCCCGGCCAGTGGCCCAGTGAAGACCTCACTTTCTGCTATGACCTGCCCGAGGACTACATCATGTGGGAGGACGCCTGGGCCATCGGACCCATCAGCATCGCCATTGTCGGGTTCCTCTGTACATCTCTGGTGTTCTGGGTGTTTGTGAGACACAACAACACGCCCCTGGTGAAGGCGTCAGGCAGAGAGTTGTGTTACATCCTGCTGCTGGGTGTCTTCATGTCCTACTCCCTCACCTTCCTCTTCCTGGCCAAGCCCTCTCCTACTATCTGCGCCATGCGACGCCTCGGCCTAAGCACCTCATTCGCTGTCTGCTACTCAGCCCTGCTCACTAAGACCAATCGGATCGCCCGGATCTTCAGCGGGGTAAAGGACGGGGGCGGGACCACAAGGCCTCGCTTCATAAGCCCCACCTCTCAGGTGTTTATCTGTCTCAGTCTGATATCGGTCCAGTTAGTGATGGTGTCTGTGTGGTTGCTGCTGGAGGTTCCTGGTACCAGGAGGTTTACGTTACCGGAGCGACGGCAGACAGTGATCCTGAAGTGTAACGTCCGTGACTCCAGCATGCTGCTGTCACTAGTATATGACGTGCTCCTGGTCATCCTGTGTACCGtGTACGCCTTCAAGACCAGGAAGTGTCCAGAGAACTTCAATGAGGCTAAATTCATTGGATTTACCATGTACACAACCTGTATCATCTGGCTAGCCTTCCTACCCATATTCTACGTCACATCCAGTGACTACAGGgtCCAGACCACCACCATGTGTATCTCTGTCAGTCTCAGTGGTTTCGTGGTGTTGGGCTGTATGTTCGCTCCCAAGGTCCACATCATCATGTTCCAACCACAGAAGAACGTCACCAGTCTCCGCCTCAATATCAACCGCTTCAGTGTCAGTGGTCCTGCCACCACATGCGCTTCACACGtgagTGCCCAGTATGTACCGACTGTGTGTAATGGGAGAGAAATTGTTGACTCCACCACTTCCTCTCTGTGACCCCACCCACTCACCTCTCTATCCCCACCCCCCAGAGACTTAGTCAATAGGCACACATTGTGcccccctgtcccctctcccaCCACGTGGACTAGCACAGTACCATTTCATGTCTGTAGAAAGTGTGCATTATGATTAAATTATtttctagtgctgtacatatcatggAATCAACATTGTTGTAGacatacaaaagaacaagagaaaatTTGTAGGAGGATTTTTTGACGCTTTGTTTTTGATAGCTTTGTTAAAAGGCTGTGTTAATTTATTTATAACTGTGTTAGGGTTGTGATAggagtgtgttgtgtatgtgtgttagggTTGTGATAGGAGTGTGTTGTGTGTTAGGGTTGTGATAGGAGTGTGTTGTGATaggagtgtgttgtgtgtgttagggttgtgataggagtgtgttgtgtgtgtgtgtgttagggttgtGATAGGTAATGCTGACATCACCGGCCACGTGTGTGCGTCTGCATGTGCCATtgcgcgcatgttgattttgtacatccacaccagacgcgatcgtgacatgcaggttgaaatatcaaaaccaaactatattaatttggagGCAGGTcgaaacattcatggacatttagctagctagctgttgagACTGCTAGTTAGTCCTGGGAGATGCACATTGGGTTGATATTTTACCTGACATGCATATGGTCTTCTAACTTTAACATTTTGACCCGGAGTCATACAAAATCTTGTTTCTCTACTCTGAcgattaatccacagataaaaaatGAAAACCTACTTAGTTTTGTTATATTTAATTAATCTCTCCTCCTGTGTTTGTCAAGCATCCACGTGGGTCTGTATCTTCCTGATATTCAATAAGGAGGGGACTTGCAGTCCGTGGAGCGtctcaaatagaaccaagttctattttagcgtgTGGCTATGCAGACGCTCGTTCAAGCGCGTGAGCGGTGCGTACGAAATTATTgaataatatatactgtatgtgtccatttattttgcaacactcgTGCACACAATGTGGCCTGTGAGGTTAGAGTTGtgataggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaggtgtgtCTGAAAACAGATGTTCTGTACGAGTAGTGGCTGCAACAGCCTCACCTGCAATAGCCCACAGACTTTCTACTCTTGTGCTTTTTTTGTAGGTCTCATTGTAATAACCCAGTCAGTATGCATTTGTATGTTGtatctgtatatttgtatatataattACTGATGGTTGGAACAGCACAATGTTGACAGTATTATGTAACTCCAGTAGGATTCCCACTACTGTGGACTGACTGTGGATGAAGCTCTGTGAGTGTTGACTAGCCCATAGGAATAGAATGGCTGGAACGGACGGACGTAGTCTCTAATTCATATAGTATGTTGAATCACACATTTGCTCTTATTATAGCAGAATAGTATCAAATATGTATTGAACTTTCCCAATATGGCAGCCAGTCCACCCAATATGGACTGTGGTTTTGAACTGGAATGTTCCTTCTACTCATTCTAATTCCATGGGACAGCCACTATGGCCATAGTAACAGACGTGTGTACAACAACAACGTTTCTATTTAACTGGTATTTCCGCATCAAACGTTAGCATCAGTGTGACAACTCAAGGTAGTTCATTAAAAGTGACTCTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208511 lncRNA downstream 81891 74450963 ~ 74451394 (-) True G183757
TU208575 lncRNA downstream 91382 74441620 ~ 74441903 (-) True G183819
TU208573 lncRNA downstream 92409 74440610 ~ 74440876 (-) True G183817
TU208505 lncRNA downstream 163478 74355650 ~ 74369807 (-) True G183754
TU208730 lncRNA upstream 72519 74666945 ~ 74668467 (-) True G183969
TU208766 lncRNA upstream 119704 74714130 ~ 74749977 (-) True G183998
TU208780 lncRNA upstream 144269 74738695 ~ 74739381 (-) True G184012
TU208793 lncRNA upstream 159301 74753727 ~ 74754012 (-) True G184025
TU209291 lncRNA upstream 414678 75009104 ~ 75037526 (-) False G184488
XR_005034539.1 mRNA downstream 25180 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 59969 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 59983 74452532 ~ 74473302 (-) False LOC110496063
XM_021571768.2 mRNA downstream 59985 74452532 ~ 74473300 (-) False LOC110496063
XM_036955510.1 mRNA downstream 59985 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 762145 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 984424 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 990131 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 1000940 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 1000940 75595366 ~ 75607735 (-) False LOC110496186
TU208238 other downstream 422494 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 539740 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 856862 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1187438 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1454906 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 136446 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1011801 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1282933 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1390733 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1498744 76093170 ~ 76099850 (-) True adm2b

Expression Profile