RNA id: TU208588


Basic Information

Item Value
RNA id TU208588
length 397
lncRNA type sense_over
GC content 0.50
exon number 3
gene id LOC110496093
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74533285 ~ 74594426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgcaGTATGACTCCACTGAGGGATCAGGAGTAAGAGAAACTCGTCTCAAGTGCTCAAATAGCTGCAAGATTTGCGCACTTCGCATTATAAATAAGGTTACTCTGGGGATGTAGCTATGTATCATGACCCAGCAGCTCTTTGGCTTGTCTGTTTCTTGTCAGAAGGTCTGATGTCCAGACTCTGTGCTCTTCCATGTATGGTCCAGTGGAACTCTCCTTGACCATTAGATGGACTACAAACAGTTCCAGCAGTTACTGCGGCCGCACCTCAAAACTCCCTTACCTTGACCCTTGACCCCTTAGCTTTAAACCCTCACCCCTGACCCATACTCTTAGCCTCTAGCCCCTCACTCCTCCTAATCCTTAACcttactccccctctcccttccctccctccc

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208662 lncRNA downstream 4306 74563922 ~ 74564654 (-) False G183903
TU208661 lncRNA downstream 4306 74564169 ~ 74564654 (-) True G183903
TU208511 lncRNA downstream 117566 74450963 ~ 74451394 (-) True G183757
TU208575 lncRNA downstream 127057 74441620 ~ 74441903 (-) True G183819
TU208573 lncRNA downstream 128084 74440610 ~ 74440876 (-) True G183817
TU208730 lncRNA upstream 72525 74666945 ~ 74668467 (-) True G183969
TU208766 lncRNA upstream 119710 74714130 ~ 74749977 (-) True G183998
TU208780 lncRNA upstream 144275 74738695 ~ 74739381 (-) True G184012
TU208793 lncRNA upstream 159307 74753727 ~ 74754012 (-) True G184025
TU209291 lncRNA upstream 414684 75009104 ~ 75037526 (-) False G184488
XR_005034539.1 mRNA downstream 60855 74501414 ~ 74508105 (-) True LOC118937295
XM_021571746.2 mRNA downstream 95644 74452532 ~ 74473316 (-) True LOC110496063
XM_036955509.1 mRNA downstream 95658 74452532 ~ 74473302 (-) False LOC110496063
XM_021571768.2 mRNA downstream 95660 74452532 ~ 74473300 (-) False LOC110496063
XM_021571925.2 mRNA upstream 762151 75356571 ~ 75361242 (-) True LOC110496174
XR_005037884.1 mRNA upstream 984430 75578850 ~ 75582017 (-) True LOC110501959
XR_005037885.1 mRNA upstream 990137 75584557 ~ 75585136 (-) True LOC118936395
XM_021571935.2 mRNA upstream 1000946 75595366 ~ 75605880 (-) False LOC110496186
XM_036955575.1 mRNA upstream 1000946 75595366 ~ 75607735 (-) False LOC110496186
TU208238 other downstream 458169 74106883 ~ 74110791 (-) True G183538
TU207716 other downstream 575415 73993078 ~ 73993545 (-) True G183096
TU207489 other downstream 892537 73676212 ~ 73676423 (-) True G182882
TU207306 other downstream 1223113 73344950 ~ 73345847 (-) True G182708
TU207075 other downstream 1490581 73076027 ~ 73078379 (-) True LOC110495704
TU208774 other upstream 136452 74730872 ~ 74732637 (-) True G184006
TU210008 other upstream 1011807 75606227 ~ 75606648 (-) True LOC110496186
TU211001 other upstream 1282939 75877359 ~ 75878060 (-) True G186002
TU211053 other upstream 1390739 75985159 ~ 75989573 (-) True tnni1c
TU211125 other upstream 1498750 76093170 ~ 76099850 (-) True adm2b

Expression Profile