RNA id: XM_021571821.2


Basic Information

Item Value
RNA id XM_021571821.2
length 5110
RNA type mRNA
GC content 0.48
exon number 17
gene id LOC110496116
representative False

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74828267 ~ 74890826 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctcctctctgtctaacaccctctcctcatctctgtctAACCCCCActcctcactctctatctctctccctctctctgtttcaagGACAGTGAAGTCCTTGGGCCTGTTTTGCGAGGCTGACCAGTAAATTGTGTGTCTGGCTGTACAGCCAGCCAGGCCTGTAGAGGCTGTATGGGAATATTATTATGGAGCATTTAGACTGTTGAGTGACTTGGATCGAACCTGTCTAATACCCATTAGACCAATTACTTAATGTCCTGGCAGTGGTACTGAAAGAGTCCTGCTGTCAAAGATACAGTATATCAGGATACGGTAAACTGGGAGAAGGACAATAGAGGAGGTCAAGGGTAGAGGAATAGGGAAATCTGAGGTAGAACAGTAGAGCTCAGTGTAGAAAAAAAACAGTCACAACCTCTCTGTTACAGGATTCACTTACAGTACAACATTCACTTACAGCACTTATCTATACTACTCTCTctgccttccttctctctctctctctctctctctctctctctctgtctctctctctctcctcctcacttttTCACTCTAGCAGCTCTCTCACACGTCCCTGTGCTCTTTCTCTTACTCGTCTCCactccctccacccccttctctctgGCTGTGCTGGCTCCCTCAGCTGTTCTCAGTTGCTCTGtgtgcagtgtgtagtgtggaCAGGGCTAGGCTGAGCTGGGCTATGTTGAGGACATAGAATGTCTCAGTGAAGACTATTTCCCAAGCTAACTGGATTAGGAGCTGGAACATACTGGACCTGTTTGTCTTTACTAACTAAAGACAGAGTTTTAATTGAGGGCATGctggaagagagaaaagagagaaacaaaTAGAGAGTCAACACTAGAGAATTGTTGGAGCAGAGACCCACGTAAAGACTGATCTCTAGCCCAGCTCCCCTCACTCTCCCCGGGATCGGTATTGTGGGACTCCCCTTGCCTCTGACCTCCAACATTGAGGTGGTATGAGTCTGCTGTGTGGGTCCGGTTCAGCTCGGTTCAGTTCCACTCAGTTCGGTTTGACTCGGTTCTGTTTGGCTTGCTTAGACTGGCTGTCTATAGCACTTACCCATACCCCTGCTCCATTTTCAGGTTCTGTGTCTCTGGAACACCTGACCCATAACCCCTGAACGTAGGACAGGTTCTGGTCCAGTTTTGCAAAATTACTGGACTGAACAGACTTCTGTTTGACAGTATttcaatacttttttattttctgGAAACTCTACCCCTGATCTGGGACTGATCCTGGTTCTGCTGACATCTATTCTGTGTTCCGGAGGACTGGTTCTTCAGGGACCTGTctggcctctctctccccaggatcATGGCCTCTTTCTGGGGCATGGTGGTGTTGCTGTATGGGATGGTGGTTATTTCTGGAGCACAGAAGACGAAGAGCAATATGCCCAGGCTAAAACTCTCTTATAAAGagatgttggaGTCCAATAACTTGGTGACATTTGAGGGCCTGGCCAATAGCTCAGCTTACCACACGTTCCTATTGGATGAGGAGAAGGGTCGTCTGGTGGTGGGAGCCAAGGACCACATATTCTCCTTCAACCTGCTCAACATCAGCAGAGACCTGGCACAGatCCCGTGGCCTGCATCCACCTCCAGAAGAGATGAGTGTAAATGGGCAGGGAAGGACCTCATGAGGGAATGCGCTAACTTCATCAAGGTGTTGCAGCCTTTTAACCAGACCCATCTGTATGTATGTGGAACTGGAGCCTTCCACCCTGTCTGCGCCTACTTGGAGGTGGGGAAGAAACTAGAGGACAGTGTGTTCAGGCTGGAGCCCCTGATAGAGAACGGTCGAGGGAAGAGCCCTTATGACCCCAAGCTGCTCACAGCGTCCATGCTCATCGaTGGCGAGCTGTATTCTGGGACGTCAGCGGACTTCATGGGGCGGGATTTTGCCATCTTCCGTACGTTGGGACAGCATCACCCCATTAGAACTGAGCAACACGACTCCCGCTGGCTGAATGATCCCAGGTTTGTGAGTGTCTATCTGATCCCAGAGAGTGACAACCCCGAGGACGACAAGATCTATCTGTTCTTCAGAGAGAACGCTATGGATGGGGAACACGCAGGGAAGGCTACACACGCACGCATCGGACAGCTCTGCAAGAATGACTTTGGAGGCCACAGGAGTTTGGTGAATAAGTGGACAACTTTCCTGAAGGCCAGACTGGTGTGTTCTGTACCTGGACTCAATGGCATAGACACACACTTTGACGAACTACAGGATGTGTTTCTGATGAGCGCTAAGGATCCCAAGAACCCCACCATATATGCAGTGTTCACTACATCCAGtaACATCTTCAAGGGCTCAGCAGTGTGTTTGTACAGCATGGCAGACATCAGAAGGGTGTTTCTAGGTCCCTATGCCCACAGGGACGGCCCTAACTATCAGTGGGTTCCCTTCCCCGGAAGGGTACCGTACCCACGACCTGGCACGTGCCCCAGCAAGACATTCGGAGGATTTGATTCAACAAAGGACTTGCCTGATGATGTCATAACATTTGCGAGAGGACACCCAGCGATGTTTAACCCCATCTATCCCATCAACAACCGACCAATCATAGTCAAGACGGACACGGACTACCAGTTCACACAGATAGTGGTGGACAAAGTGGAGGCTGAGGACGGACAGTATGACGTCATGTTCATaggcacagACATGGGTAAAGTGCTGAAGGTGGTGTCCATCCCCAGAGGGTCCTGGCATGACCTGGAAGAGGTTCTACTGGAGGAGATGACTGTGTTCAGGGAGCCAACTGCTATTACAGCGATGGAACTCTCCACGAAGCAGCAACAGTTGTACCTAGGCTCAGAGCTGGGCATATCCCAGATGCCTTTGCATCGCTGTGAGGTGTACGGGAAGGCGTGTGCTGAGTGCTGTCTAGCTAGAGACCCTTACTGTGCCTGGGATGGGACCGAGTGCTCACGATACTTTCCCATGGCCAAgagGAGGACAAGGAGACAGGACATCAGGAATGGAGACCCTTTAACCCAGTGTTCAGACCTGCAGCATCATGATAACCTGAATGTGCAGCCCACGGTGCTGGATAAGACAGTGTATGCAGTGGAGAACAGCAGTACGTTCCTGGAGTGTAGCCCCAAGTCCCAGAGAGCACTCACCTACTGGCAGTACCAACAAGTCAACGACGACAGGAGACAAGACATCAAAGCAGAGGATCGTTTTGTCCGTACGGAGCAGGGCCTGCTGATCCGCATATTGAACAAAAAGGATTCTGGGACTTATGTGTGCCAGGCTGTAGAACACGGCTTCATGCAGACGCTCCTAAGGGTCACCCTGGAAGTCATCGACACTGAACGCCTCGACGAGCTCATTCACCGTGATGACGAAACTGCCACACACACCACTgccacacacaccacctcctggGACACGCCCACAGCCCGGGAATCATCCAATCAGAAGCTATGGTACCGTGACTTCCTGTCATTAGTGAACCACCCGACCCTGAACAGCGTGGATGAGTTCTGTGAGCAGGTGTGGAAGAGGGAAAAGAAGCAGAGGAGGCAGAAAGCACACCTATCCCAACAGGTCCAGCTACACCAGCAGCAGCAGGGCCTCGTGCACGCTCACACCCACGTGAACGCCCATGGGCTTGCGGCCAAGTGGAAACACCTGCAGGAGAGGCAGAAGGGCCGCAACCGTCGGACCCATGAACTGGAGAGAGCCCCCCGCAGCGTCTGACCTCGCACCGACTAAATCCCATGACCCCGCCTGACCCCCAACCCCTAATCCATGTACACTGTCCTCATCCTCAGATCCCCCCTGAACCTCCTCCCCTGCCTCATCTCTCCTTACAGAGATAAAGACTCGTTCCACACTGACTTTGTACAGAGAATCTCAACTGGAAACAAAGGCAATATCCCGCCCTGGTCTGTGCGTGTAGGCTGCGTGGCCACCCATGTTTACAGTGACACGGCACAGAGACAAAGGATGTTACAGGACACCAGGTGATACAGTACTCTTCTATAATCTCAGCTGGCCTCTGTAGCCCCAGCACCATGGAGGGACAGTGTTAGCCTACATGTGGACTGGACTCCACGTACTGCAGAATAACTTATTGAAAACATGGCTCTGTCTCCGCTGTAGTGTAGCTTTGTTTGTTAGTCGTGTCTCGTCATTGTTGTCCACCCAGATATAGTAGTTAGCTTCTCCTAACAACCACTATCTTGGAACAAGGGATGATAGTGTTTGATGAAATGACGGAGCAGGGACGGACCTCGTGTGTATCACAAGGACATAACTACATACAGGTCATGTAAAGCACAACACTTTGATGTTGATTGGATTCTATGAGAAATGAAGAGTcctaaggagagaggaggatgactgAGCACTGCAAGATACTTCAGAGTAGCCATGGATTTACAACTAATTATGTTATTCTAACTTAAATCCAACATGTAAATGTGCTTTGACATCCTCATACTAAAGGGAATGGTTTGCGGTTATCTTGTTACATGATGTTGTTTCCCcataaacaaatgtatttaaCAGAAGGTGATTTGGTTTTTCCCGAAAGCAGTAGGTAGATAAAGTATCCAACATGATTCTGAAAGTCACTGTGTTAAGTGTATAGATAAGCTCTTCCAAGGCACAaatgttttcatgttttatttAAACGTGTATCTTTTTGATTTGCTCAGAGCCCTGTATAAGTATTTGTTACATAGTGGAAGTTGACTTTATTTTCTTTATGTTATGTTTCAGTCCAACCACTGCATCCCATCTTAACTAAAACTTTAACATGTCGCTGCATCAACTATGTCACATTGTTTGATTGAATCAATTTGCAAACAAAACTTGTTTtcaccacatacagtgccttcagtatTCATGCTCCTTGACATactccacattttgctgtgttataGCCTTAAttgaaaatggattaaatcaataTTTTAAAACCCATCAACACACAaaaccccaaaatgacaaagtgaaaacatgtatttttaatttCTTGTgattttattgaaaatgaaatacataaatacaagCATACacgtaacatgatgcagccaccaccatgtttgaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208844 lncRNA upstream 24453 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 35528 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 42599 74785432 ~ 74785668 (+) True G184060
TU208824 lncRNA upstream 46077 74781959 ~ 74782190 (+) True G184055
TU208791 lncRNA upstream 74639 74753366 ~ 74753628 (+) True G184023
TU209125 lncRNA downstream 128277 75019103 ~ 75034943 (+) True G184332
TU209128 lncRNA downstream 148939 75039765 ~ 75045926 (+) True G184335
TU209134 lncRNA downstream 166171 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 189106 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 190995 75081821 ~ 75082029 (+) True G184359
XM_036955511.1 mRNA upstream 95585 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA upstream 95585 74660363 ~ 74732682 (+) False LOC110496107
XR_005037863.1 mRNA upstream 298668 74519776 ~ 74529599 (+) False LOC110496089
XR_005037865.1 mRNA upstream 298668 74519776 ~ 74529599 (+) False LOC110496089
XR_005037866.1 mRNA upstream 298668 74519776 ~ 74529599 (+) True LOC110496089
XM_036955513.1 mRNA downstream 19641 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA downstream 19641 74910467 ~ 74962990 (+) False LOC110496126
XM_036955515.1 mRNA downstream 19641 74910467 ~ 74962990 (+) False LOC110496126
XM_036955516.1 mRNA downstream 19641 74910467 ~ 74962990 (+) True LOC110496126
XM_036934200.1 mRNA downstream 80412 74971238 ~ 74988691 (+) True LOC118936821
TU208178 other upstream 114153 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 293241 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1203749 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1218030 73606892 ~ 73610237 (+) True G182139
TU206574 other upstream 1248192 73576765 ~ 73580075 (+) True LOC110501876
TU209105 other downstream 146426 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 195796 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1276831 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1276831 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1542991 76433817 ~ 76434615 (+) True G185462

Expression Profile