RNA id: XM_036955516.1


Basic Information

Item Value
RNA id XM_036955516.1
length 6821
RNA type mRNA
GC content 0.47
exon number 17
gene id LOC110496126
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74910467 ~ 74962990 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAGTGTAATAAGAAGGAAGGAGAATAATAAGGAAGGAGTGTAATAAGAAGGAAGGAGTGTAATAAGGAAGGAGTGTAACAAGAAGGAGTGTAATAATGAGTGTAATAAGGAAGGAGTGTAATAAGAAGGAGTGTAATAAGGAAGGAGTGTAATAAGAAGGAGTGTAATAAGGAAGGAGTGTAATAAGGAAGTATTGTAATAAGAATGAGTGTAATAATAAGGAAGAAGTGTaagaaggagggagaagaaggaGTGTAATAAGGAAGGAGTGTAATAAGAAGGAGTGAAATAAGAAGGTGTGTAAGAACGAAGGAGATGCACATCAGAGTGATTTCAAATGTGGAAAATAATCGGATAACCATTCCACTCACCTCCTCCTCAACAACAGATGCTGATTTATAATTAAGGGTTGTTaacaaaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgagtgcgtgcttgtgtgcatgcgtgtgtaatGTGAGCTCTGTTGTGTTCAGCCAGTGAACAGGTGCAGAGTGGGAGTTAGATTCGACCTCTGGGAGGACAGCTGCCTCTCTATGGACCATGATCCTCTCTGCTCCTGATTTAAGCATCCTTTACAATCAAATAATCCATGCCGATGGATACACACTGTATGTCAACTGCTGGcttacactctctctccctctcccccttgttCTCTCCCTCAACTTTAGAAGCAAATGGCCTGTCTCTTTTGAGATGCGGTCCTATTTCCTGCTTATCACACGTATCCTGAACATGCTGTGTAATGGAATCAACAGACCAAGGTGGGAAGGACTGCAATTAGAATAGTTGCGTCAGTGGTTGTGAGGTTACACATGTCTTTCAAACATCAGAGAAACATCCTATCACAACTGTAACTCTGCTAAGCCTGAATCATATCAGATCTCCTGATTGTACACCAATCACACAGCTAgagaataataatacatattaagGCTGTCATGGTGACATTtttatcacacacatacacatacccagacacacacaacactttCATCATACAGAATGCACAAAATTCAGTGAGAAAAATAACTGTAACGTTTCAAATAGATCCATGTAATTGAAGATAATCAGATTCACAGAAATGGTCTCCTTGAAGAACATGGAAAGACAAAAAAGAAAACCAAGGACTCCAAAGAGGTGGACATTTGTTCACTGTTATAAACACAATAAGGAGTGTTGACCATATCTGTCACaggctacacacaaacacacagcttgGAGAaagaacagacagtaacagcaggaTCTTCTGGAGAAGAGAACACACTAATAACAGGGCttcagacaggtgagagagaagagggggagaagagagacagagagcaagggaATGAGAGACATACAGTGGAGataaaggagagaaggaaagtggAAAGTGACAAGTGAGAGTACAATTTTAAACAAAAAGCTAATAAAGAGTGAGAAATAAGGGTCAgaggggaaaggaaagagagagaaggagataaaaGAAGAGGGAGAAACTAGAGTCTGGATAAACTTTGGCTGAGGTCCATAATAATGCTGCAGGAGAAGGGCGGTCGGGAAGAAgtggagggggacagggagagagggaggagaggagatgagaggtggtGGGCTGCACTGTGCGGTTCAGTGCTGTGTGGCGCGTGGAGAAGGAGTATTTCTTGGAGCAGAGCAGGGGAGAGGCTGACCCTGAGATACACCCTGCAGGCTGCACTTcagctgtcagagagagagactgcgagagagagcgaaattGAGGCGAgataggagagagactgagagagagagagagagattgaggagtgataggagagagagagagaaagagagaaggggagtgaaagagagagagacagagtggggaaagagagaggaagagagagaggtttctTCTCATTAGCAGGAGTCAATCGTCAaattaatgaattaatgaatggcacacacacacgggtaTGTATCCTCTGCTCTGAGGAGTGGAAGCAGTACACATTAGTGAGCACAGTTGTTTGGATCCTCCTTGCCTGAtcagaggggggaaagagagagaacacaagaGAAACAtcacaagagagacagagagaaagagagagagtctccctctgcctctcctgcTTCCCCTGGGCTAGTGGCCAGACACTGACTCTGTTGGATCCTGGAAGAACACAAGCTGGGGATACCACAATGCTGCCTTAGACAGAATGACAGAACACACAGCAGCACTTTGGAAGGACTATCAGCAGAATTTATTTTTCTTCATTTGTTCAGACATAAAGAAGATACAACATCCCTGCCAGGCTGCCACAAGAACGACAGTCAgtcggacagacggacagagagcaGCAGTGGTTATGCAGCACGGGCTGTAACAGCTGGAGTACTCTCTCTTGCCTGAAGCAATTGGTTTTAGGAGCTAAGTTCCTCACTACCTCTCAATCATTGAATCATAGTTCTGTAGGATCTCCTCTCATAAAGATAGACACAATACTGCAGTAGTCCCTACAGACTGAGACAGAACAGTACAGCTCCACTTGGAGATCAGTAGAACGAAACCGTGGATTCTTCCCTCTCCGAGGGCTGAGAAACCTGCAATACCTGTGGTCAGAGACTGGATTGCTGCCTTTTCCTATGGAGGACAGATTGATGatgatactgtatatctgattCATTATAACATACTCTGGTCATAGAGCCTGGACTCTCCCAGGTGGATATTTCCTACACTTCCCTTGGACTTAAGTAGTGATTCACACTGGATTGGCTTACTCCCTGTTCGGTGTGTTTGTGTCAGGATGGAGTGTGTGAAGAATGTGTCTCTGATTCTGAGTGTTTTCCTGTTGAGCTCAGCACACTCAGCCCAGAGCGTCTACCCCAGAATACGACTCTCCCATAAAGAGTTATGGGATCTGAACAGGACGTGGGTGTTTCAGGGACCAGGTCCCTCcctgcagccccagaccatgctGTTGGACGAGGCCCATGAAAGGCTGTACGTAGGGGCTAAAAACATCATGTACTCCCTCAGCCTGGAGAGAGTTAACCACCAACACAGAGAGATCGACTGGGCCAGCTCTGTGTCGCAGGTAGAAGATTGTCTGATGAAAGGCAGAGAGAAGccAGAGTGTGCTAACTACATCAAGGTGCTGCATCGGTATAACACCACCCACCTGTTGGCATGCGGAACAGGAGCATTTAATCCTCACTGTGCCAAAATCAGGGTGGGACACACAGGACAGGTCAGGCAGTTTGAGCTGGAGGAGCAGAGTATAGAGAGCGGCAGAGGGAGATGTCCCTACGACCACAACAGCCCCGTTACATCCACCCTGGACAgAGGAGAGCTGTATATTGGCCTGTACACAGACTACTGGGAGAATGACGCAGCTCTGTGTCGACTGAACAACCAGAGCTACACACGCACTGAGAGAGACGACAGACAACAGCTCAATGAGCCGAAGTTTATTGGGTCGGTGGTGATTCCTGATAACAATGACAGGGATGATGACAAGGTCTACTTCTTCTTcacggagagagggacggacgcaGAGGGGGTTAACAAGGCTGTTTACACCAGGGTGGGACGGGTCTGTGCGAATGATCAGGGAGGTCAGAGGATGTTGGTGAATCGTTGGAGCTCCTTCCTAAAGACTCGTCTCATCTGCTCTGTGGCTGGACCCAATGGCATCGACACACACTTTGACGAGCTAGAGGATGTATTTGTGTTGAAGAACAAGGATGAGAAGAATCCAGAGATTTTTGGCCTCTTCAGCACTACAAGtGCTGTGTTCCAGGGCTATGCGGTGTGTGTGTACCACATGGATGATGTGCGAGCAGCGTTCAATGGCCAGTTTGCCCACCGGGAGAGACCAGAGCACCACTGGACCCCCTACGAAGGCCGGGTCCCCTACCCACGCCCCGGATCTtGTGCCAGTGAGGTGAATGGTGGTGGGTTCTCAGGTTCTAAGGAGTTCCCTGATGAGGTTCTGCGATTCGTGCGTTCCCACCCGGTCATGTTTAGCCCGGTCCTCCCCCTCCACCGCAGACCAGTTCTACTGCAGACAGAGCCAGGGGGGAGGAGACTAACTCAGATCGCTGTGGACCGTGTCCAGGCCCAGGATGGACACTATCATGTTCTGTATATAGGAACAGGCGACTCTGTGGTGTTGAAGGTTATCACCATCTACAACAAAGACACAGACACCATAGAGGAAGTGCTGCTGGAGGAACTGCAGGTGTTCAAGGTCCCTTTTCCAATAACTGAGATCATCATATCAGCTAAACGGCAACAGCTATATGTGGGTTCTGAGGTTGGTGTGGCTCAGGTGAGGCTCCATCAGTGTGACCTGTACGGGTCTGAGTGTGCCGACTGTTGCCTAGCGAGGGACCCTTACTGCGCCTGGGATGGAATTACCTGCTCACGATACTACCCTGCTGGGGTTTACACTAAGAgacgATTCAGGAGACAGGATGTTCGCCATGGCAACGCTGTACAGCTGTGCAACGGGCTACAGATTGatgGGGAGCAGTACCAGGGTGCAGGGGAGATGCAGGTGTATGGGGTAGAGAGTAACAGTACTCTACTAGAGTGTACCCCTCGTTCTCTACAGGCCAGAGTCATGTGGTACATACAGAGGGAcccagacagagaggagGTCGGAGGTGATGAGCGTGTAGTTATGACAACCCACGGGCTGCTGTTCCTGCGTGTTCGGAGCGGGGATGCTGGTGTGTACGTGTGTCAGACGGTGGAACATGGCTATGTCCACACCCTACTGAGGGTCACGCTACACGTGTTGGGAGGGCAGAAGGTTGGGGCCCTGATACAcaagacaggggaggagggagagggggagaaaaaagaAACCTGTCACCTCCCTATAGATACCTCTCCAGACCCCCACCCTGGTTCCAACTCTGACCCAAGTTCCAGGCTACAAGGAGCCCTGCCAGGGTTATCCTTAGCCCAAGCCCCAACTCCAGGCCCTACCTCCAGGCTGCCAGGCCCTGGTACTACATCCAGGctgccagccccaggaccaggcCCTTCCTCACAGCTGTGGTACAAGGAGTTTCTCCAGCTGATAGGCTATGGGGACTCCCAGAAGGTGGAGGAGTACTGTGAGAGGGTCTGGTGCTCAGGGAAGAGACGCAGGAAGACTAAACGCAGATACACCCAGCCAATGGAagtaggagagaggaaggggagggggaaaggagaccCACACCGAGCCCCCAGACACACCTTGGACaactgaggggagagagagtgagagggtagagactgtacaacacacacacacacacacacacacacacacacacacactgggacaggtTTTTTTCAGTAGAGAATACTACAACCAACAAAGCTAAAACGTGGCACTGTCTTCTCTTAGACTTGAAAATATTGTCATATTCCTTCTAATAACCAGACTTTGTTATATTGTGTTTTTCCTTCCATGAGTTCTGGTGGAAACCTTGCCACTGGTAGATATGCAGAGTGTGTTTGTCCCTGAGTGTCCGTCAGATCGAAGGCATGTAGAACAGACTAATTGTTTGGAACGACGTGGCCTCTGACTTTAAGACCACAGAACTGACAGCAGGCCTCTCTGAGCGGACAAAGGATTCACAGCCATGCCAGATGAACACACAGATAACAGACATTCAAACAGATTCATTAGAAATAAAACATGTGTATGTTTCTAGAGATACTCTTGAGCTGCTCGTGTTAAAAACCACTGATTAGAAAATACATCAAGCGTACGCACATCAACAAGTAGTGTTTCTTTCTAATGTGTCTTACTGTAATTACATGATTATTAGTATAGGTATCTGTTTTGAGTTTAGTAGTGCTTTTGATTTTATTCAACTGGAAACAGTGCTGTGATATTGTTTTACTGTATAATTAAATGTTAACTTTCATGACGATGTAGGCGAGTATTATCTACCATACTTTGTCAGATCGTATGGTTTAACTTGTGATTTCATGTGGTTTCACATGAGAATTAGAATTCTAGGTAAGTTGACATCATTGAATGATTACATTAATGCAAAATTCTGTGTGTGCGGCTCAGAGAATATTCAACAAAGAATACCACTGAACAATATAAACAGTTTGGAGAATCTACTGTTGATGATGGAACATGGATTCTATCAAATGGAATAGATGTAACCCCGCAATAAAAGTTATAGATACTTCATCTGAGTCTTTAGATATGAAATCATATCCAAAGTGTATCTCAACAGATGCATTTCCCCTTCAATAAATGTCCAACTTAAATGTGAAGTGTCTTCAACTGGTAATTATAAAGAGTTGATTAATGAATATTCATATCAGCTCCTGCATggctgtctatttctctctcttcccccctctcttcccctctctctctgtcaccggGGTCAGTAATGATGGAAGAGATGGAGTTCATAATAACCAGAACAGAAGCCAATCTACGTCACCACATTTTCCCTCTGGAATAAGGAAGAGCGCCACAGTGACCATTCAAGCATGTCATTGGCTAGGAGCCTGTCTCATTAATATTCAAACTCATCTGAGGAATTAATCTGTTACACATTCTGACAATGTAAcgttcatcaaggtgtttttgtTGAGTAAGAGTTTTGGCCTAAatagaaactgtgtgtgtgtgtgacattactgtgtgtgtgtgtgtgtacctgacatTAAAAAATGTGTATGC

Function

GO: NA

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208893 lncRNA upstream 29349 74878646 ~ 74881118 (+) True G184122
TU208844 lncRNA upstream 106653 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 117728 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 124799 74785432 ~ 74785668 (+) True G184060
TU208824 lncRNA upstream 128277 74781959 ~ 74782190 (+) True G184055
TU209125 lncRNA downstream 56113 75019103 ~ 75034943 (+) True G184332
TU209128 lncRNA downstream 76775 75039765 ~ 75045926 (+) True G184335
TU209134 lncRNA downstream 94007 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 116942 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 118831 75081821 ~ 75082029 (+) True G184359
XM_021571821.2 mRNA upstream 19641 74828267 ~ 74890826 (+) False LOC110496116
XM_036955511.1 mRNA upstream 177785 74660359 ~ 74732682 (+) False LOC110496107
XM_036955512.1 mRNA upstream 177785 74660363 ~ 74732682 (+) False LOC110496107
XR_005037865.1 mRNA upstream 380868 74519776 ~ 74529599 (+) False LOC110496089
XM_036934200.1 mRNA downstream 8248 74971238 ~ 74988691 (+) True LOC118936821
XM_036955517.1 mRNA downstream 28665 74991655 ~ 75145601 (+) False LOC110496136
XM_036955518.1 mRNA downstream 28665 74991655 ~ 75145601 (+) False LOC110496136
XM_036955519.1 mRNA downstream 28665 74991655 ~ 75145601 (+) False LOC110496136
XM_036955520.1 mRNA downstream 28665 74991655 ~ 75145601 (+) False LOC110496136
TU208835 other upstream 23967 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 196353 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 375441 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1285949 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1300230 73606892 ~ 73610237 (+) True G182139
TU209105 other downstream 74262 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 123632 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1204667 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1204667 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1470827 76433817 ~ 76434615 (+) True G185462

Expression Profile