RNA id: XM_036934200.1


Basic Information

Item Value
RNA id XM_036934200.1
length 1482
RNA type mRNA
GC content 0.54
exon number 3
gene id LOC118936821
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 74971238 ~ 74988691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTCAGAGTATAACTGCCAGATGAAAGACGGTGGCGCATGCGCAGTGTTCAGGAAGGCAGAATCAGTGGATGCTGTAGACCCGCGCCGCTCTTTGCCCTCCATCCCTCCGCAGCCAGCCTGTCAGACCACAGAAACCGACAAAGAGGAGCCTACTGTAGGAGGGCTGAGTCAAGATGGGGAGAGACATCTGGCACTTGAGAGCCAAAGCCACGAAAGGAATTCTGGTGTAGAATTTGAACCAGAGGAGAGCccaggcagcagcagcaacagtagcagtagtagcagcgaCAGCAGTAGTGGGGCGGTAGATGCCCTACCCCCAGCCCCAGTTCCTCCCCAGGCCCCtgcaggagagaagagagaggatagCTCCTGCTCTGACTCAGGCAGCTCTGTAGAGTCCAGCGAGGAGGAACCTGCCATGTTCTCTAACTTTTTAAGTGGTGCGAATCCCCTCAGCTCCGTCTCTTCTGCTGTCAGAGGAAGTCTGTTTGGGGATAATACGGAGGGGGACAAACAGAAAGCAGGCACTCAGCAGCCTGGGTCAGGCCCTGGCCCTCGGAATGCCCCGCAGCAGGGACATAGGAAACAGGACCAGGCACCTCCTAAACAGGCAGGACCCCAGCTCCAGGGGAATGGCCAGGCTGGTCAAGCAGACAAACCTAGCGGGCAGCAAGCCTCCACTAAGGGTGGACCAAAACAGCAAGCCCCTGCTAAGGGTGAACCACAACAGGAAGCCCCTGATAAGGGTGGACCTCAACAGCAAGGATCTCATAAAGGTGAGCCTCAACAGGAAGGACCTGGTAAAGGAAGACTACAACAAGCCCCCCAGCAGCAAGGACCTCCTAAAGCTGGACCACAACAAGATTCCCCTGTGGTAGGGGCTCAACAGCAAGCCCCTGCTAAGGGTGGACCACAACAACAATGGTCACCTAAGGTTGGGGCTCAACAAGAAGCTCCTAAGTGTGGACCACAACAGCAAGGTTTGCCTATGTTTGGAGCTCAACAGCAAGCCCCTGCTAAAAGTGGACCCCAACAGCAAGGTTCACATAAAGTTGGGGCTCAACATCAAGCTCTTACTAAAGTTGGACCCCAACAACAAGGTTCACCTAAGGTTGGAGCTCAACAGCAAGCCCCTTCTAAGGGTAGACCACAACAGCAAGGGTCCCCTAAGGTTGGAGTTCAGCCACAAGGGTTCACTAAGAAAGGGACTCAGCAGCAGGGCTCCCCCAGGACTACACCACAGCAGCAGGCTTCTGGTAAACCTGGGACTCAGTCTAATGCTGGACCTATGGCTGGAGCTAAACCCCTGTGTCCAGTGTGCAACACTACTGGACTCAACCTGAACACCAAGGAGCCACCCAACCATAACACCTGCACACAGTGTAAGACTGTCGTCTGCAGCTTGTGTGGCTTCAGTCCTCCTGACTCGGGTGTAAGTAGAGATTCATTCCAGTATATATTTAACGTTAGAAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208893 lncRNA upstream 90120 74878646 ~ 74881118 (+) True G184122
TU208844 lncRNA upstream 167424 74803595 ~ 74803814 (+) True G184075
TU208841 lncRNA upstream 178499 74792406 ~ 74792739 (+) True G184072
TU208829 lncRNA upstream 185570 74785432 ~ 74785668 (+) True G184060
TU208824 lncRNA upstream 189048 74781959 ~ 74782190 (+) True G184055
TU209125 lncRNA downstream 30412 75019103 ~ 75034943 (+) True G184332
TU209128 lncRNA downstream 51074 75039765 ~ 75045926 (+) True G184335
TU209134 lncRNA downstream 68306 75056997 ~ 75057785 (+) True G184341
TU209151 lncRNA downstream 91241 75079932 ~ 75080163 (+) True G184358
TU209152 lncRNA downstream 93130 75081821 ~ 75082029 (+) True G184359
XM_036955513.1 mRNA upstream 8248 74910467 ~ 74962990 (+) False LOC110496126
XM_036955514.1 mRNA upstream 8248 74910467 ~ 74962990 (+) False LOC110496126
XM_036955515.1 mRNA upstream 8248 74910467 ~ 74962990 (+) False LOC110496126
XM_036955516.1 mRNA upstream 8248 74910467 ~ 74962990 (+) True LOC110496126
XM_021571821.2 mRNA upstream 80412 74828267 ~ 74890826 (+) False LOC110496116
XM_036955517.1 mRNA downstream 2964 74991655 ~ 75145601 (+) False LOC110496136
XM_036955518.1 mRNA downstream 2964 74991655 ~ 75145601 (+) False LOC110496136
XM_036955519.1 mRNA downstream 2964 74991655 ~ 75145601 (+) False LOC110496136
XM_036955520.1 mRNA downstream 2964 74991655 ~ 75145601 (+) False LOC110496136
XM_036955531.1 mRNA downstream 153311 75142002 ~ 75256839 (+) False LOC110501950
TU208835 other upstream 84738 74886098 ~ 74886500 (+) True LOC110496116
TU208178 other upstream 257124 74711581 ~ 74714114 (+) False LOC110496107
TU208054 other upstream 436212 74529649 ~ 74535026 (+) True G183361
TU206688 other upstream 1346720 73622536 ~ 73624518 (+) True G182144
TU206683 other upstream 1361001 73606892 ~ 73610237 (+) True G182139
TU209105 other downstream 48561 75037252 ~ 75041090 (+) False LOC110496136
TU209106 other downstream 97931 75086622 ~ 75087407 (+) False LOC110496136
TU210196 other downstream 1178966 76167657 ~ 76169295 (+) False LOC110496459
TU210197 other downstream 1178966 76167657 ~ 76169295 (+) True LOC110496459
TU210392 other downstream 1445126 76433817 ~ 76434615 (+) True G185462

Expression Profile